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Search of human proteins with 239741930
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741930 PREDICTED: hypothetical protein XP_002342355 [Homo
sapiens]
(86 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239741930 PREDICTED: hypothetical protein XP_002342355 [Homo ... 190 2e-49
gi|239753468 PREDICTED: hypothetical protein [Homo sapiens] 187 2e-48
gi|239748036 PREDICTED: hypothetical protein XP_002346497 [Homo ... 176 5e-45
gi|239741928 PREDICTED: hypothetical protein XP_002342354 [Homo ... 176 5e-45
gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho... 32 0.11
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 31 0.18
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 31 0.18
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 31 0.18
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 30 0.31
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 30 0.41
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 30 0.41
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 30 0.41
gi|24308227 zinc finger protein 687 [Homo sapiens] 30 0.41
gi|19718796 RAD17 homolog isoform 1 [Homo sapiens] 29 0.70
gi|19718794 RAD17 homolog isoform 1 [Homo sapiens] 29 0.70
gi|19718792 RAD17 homolog isoform 1 [Homo sapiens] 29 0.70
gi|19718790 RAD17 homolog isoform 4 [Homo sapiens] 29 0.70
gi|19718788 RAD17 homolog isoform 3 [Homo sapiens] 29 0.70
gi|19718784 RAD17 homolog isoform 1 [Homo sapiens] 29 0.70
gi|4506383 RAD17 homolog isoform 1 [Homo sapiens] 29 0.70
gi|19718786 RAD17 homolog isoform 2 [Homo sapiens] 29 0.70
gi|122937321 UNC homeobox [Homo sapiens] 29 0.70
gi|73476377 LBXCOR1 homolog [Homo sapiens] 29 0.91
gi|21704287 sialidase 4 [Homo sapiens] 29 0.91
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 28 1.2
gi|239747357 PREDICTED: hypothetical protein XP_002346431 [Homo ... 28 1.2
gi|21536357 TBP-associated factor 6 isoform delta [Homo sapiens] 28 1.2
gi|21536355 TBP-associated factor 6 isoform gamma [Homo sapiens] 28 1.2
gi|5032147 TBP-associated factor 6 isoform alpha [Homo sapiens] 28 1.2
gi|21536359 TBP-associated factor 6 isoform alpha [Homo sapiens] 28 1.2
>gi|239741930 PREDICTED: hypothetical protein XP_002342355 [Homo
sapiens]
Length = 86
Score = 190 bits (483), Expect = 2e-49
Identities = 86/86 (100%), Positives = 86/86 (100%)
Query: 1 MAWACRLRTESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWG 60
MAWACRLRTESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWG
Sbjct: 1 MAWACRLRTESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWG 60
Query: 61 SSGRTGNPQEWTLPLRKGREDQRTRG 86
SSGRTGNPQEWTLPLRKGREDQRTRG
Sbjct: 61 SSGRTGNPQEWTLPLRKGREDQRTRG 86
>gi|239753468 PREDICTED: hypothetical protein [Homo sapiens]
Length = 86
Score = 187 bits (475), Expect = 2e-48
Identities = 85/86 (98%), Positives = 85/86 (98%)
Query: 1 MAWACRLRTESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWG 60
MAWACRLRTESGKLES NPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWG
Sbjct: 1 MAWACRLRTESGKLESQNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWG 60
Query: 61 SSGRTGNPQEWTLPLRKGREDQRTRG 86
SSGRTGNPQEWTLPLRKGREDQRTRG
Sbjct: 61 SSGRTGNPQEWTLPLRKGREDQRTRG 86
>gi|239748036 PREDICTED: hypothetical protein XP_002346497 [Homo
sapiens]
Length = 123
Score = 176 bits (445), Expect = 5e-45
Identities = 80/80 (100%), Positives = 80/80 (100%)
Query: 7 LRTESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTG 66
LRTESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTG
Sbjct: 44 LRTESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTG 103
Query: 67 NPQEWTLPLRKGREDQRTRG 86
NPQEWTLPLRKGREDQRTRG
Sbjct: 104 NPQEWTLPLRKGREDQRTRG 123
>gi|239741928 PREDICTED: hypothetical protein XP_002342354 [Homo
sapiens]
Length = 130
Score = 176 bits (445), Expect = 5e-45
Identities = 80/80 (100%), Positives = 80/80 (100%)
Query: 7 LRTESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTG 66
LRTESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTG
Sbjct: 51 LRTESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTG 110
Query: 67 NPQEWTLPLRKGREDQRTRG 86
NPQEWTLPLRKGREDQRTRG
Sbjct: 111 NPQEWTLPLRKGREDQRTRG 130
>gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like
[Homo sapiens]
Length = 406
Score = 32.0 bits (71), Expect = 0.11
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 14 LESHNPQEWTLP--LGKGGEDREPTRVDPPAG-EVQGGPGTHKSGPS----LWGSSGRTG 66
+E N ++ T+ + +GGED E TR P G E + GT S PS G G
Sbjct: 23 IEEVNDEKLTVTSLMARGGEDEENTRSKPEYGTEAENNVGTEGSVPSDDQDREGGGGHEP 82
Query: 67 NPQEWTLPLRKGREDQ 82
Q+ PL K + Q
Sbjct: 83 EQQQEEPPLTKPEQQQ 98
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 31.2 bits (69), Expect = 0.18
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 25 PLGKGGEDREPTRVDPPAGEV-------QGGPGTHKSGPSLWGSSGRTGNPQEWT 72
P GK G+D +P PAGE + GP P L G G +G+P WT
Sbjct: 1389 PRGKPGKDGKPG-TPGPAGEKGNKGSKGEPGPAGSDGLPGLKGKRGDSGSPATWT 1442
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 31.2 bits (69), Expect = 0.18
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 25 PLGKGGEDREPTRVDPPAGEV-------QGGPGTHKSGPSLWGSSGRTGNPQEWT 72
P GK G+D +P PAGE + GP P L G G +G+P WT
Sbjct: 1389 PRGKPGKDGKPG-TPGPAGEKGNKGSKGEPGPAGSDGLPGLKGKRGDSGSPATWT 1442
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 31.2 bits (69), Expect = 0.18
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 25 PLGKGGEDREPTRVDPPAGEV-------QGGPGTHKSGPSLWGSSGRTGNPQEWT 72
P GK G+D +P PAGE + GP P L G G +G+P WT
Sbjct: 1389 PRGKPGKDGKPG-TPGPAGEKGNKGSKGEPGPAGSDGLPGLKGKRGDSGSPATWT 1442
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 30.4 bits (67), Expect = 0.31
Identities = 20/69 (28%), Positives = 28/69 (40%)
Query: 10 ESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQ 69
E G+ PQ P G G P R PP + + GPG P + G G +G
Sbjct: 344 EDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAG 403
Query: 70 EWTLPLRKG 78
+ +P +G
Sbjct: 404 KPGVPGERG 412
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 30.0 bits (66), Expect = 0.41
Identities = 17/51 (33%), Positives = 20/51 (39%)
Query: 25 PLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPL 75
P+G GG P P + GPG K + G G G P E PL
Sbjct: 1368 PIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEVIQPL 1418
Score = 26.9 bits (58), Expect = 3.5
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 25 PLGKGGEDREPTRVDPPAGEVQGGPGTHKSG-----PSLWGSSGRTGNPQEWTLPLRKG 78
P G GE EP ++P V+G PG P + G+ G G+P E P R G
Sbjct: 292 PRGLKGEKGEPAVLEPGM-LVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAG 349
Score = 25.8 bits (55), Expect = 7.7
Identities = 18/59 (30%), Positives = 21/59 (35%)
Query: 10 ESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNP 68
E+G + P P G G + PP G GP K P GS G G P
Sbjct: 1083 ETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEP 1141
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 30.0 bits (66), Expect = 0.41
Identities = 17/51 (33%), Positives = 20/51 (39%)
Query: 25 PLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPL 75
P+G GG P P + GPG K + G G G P E PL
Sbjct: 1347 PIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEVIQPL 1397
Score = 26.9 bits (58), Expect = 3.5
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 25 PLGKGGEDREPTRVDPPAGEVQGGPGTHKSG-----PSLWGSSGRTGNPQEWTLPLRKG 78
P G GE EP ++P V+G PG P + G+ G G+P E P R G
Sbjct: 271 PRGLKGEKGEPAVLEPGM-LVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAG 328
Score = 25.8 bits (55), Expect = 7.7
Identities = 18/59 (30%), Positives = 21/59 (35%)
Query: 10 ESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNP 68
E+G + P P G G + PP G GP K P GS G G P
Sbjct: 1062 ETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEP 1120
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 30.0 bits (66), Expect = 0.41
Identities = 17/51 (33%), Positives = 20/51 (39%)
Query: 25 PLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPL 75
P+G GG P P + GPG K + G G G P E PL
Sbjct: 1454 PIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEVIQPL 1504
Score = 26.9 bits (58), Expect = 3.5
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 25 PLGKGGEDREPTRVDPPAGEVQGGPGTHKSG-----PSLWGSSGRTGNPQEWTLPLRKG 78
P G GE EP ++P V+G PG P + G+ G G+P E P R G
Sbjct: 378 PRGLKGEKGEPAVLEPGM-LVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAG 435
Score = 25.8 bits (55), Expect = 7.7
Identities = 18/59 (30%), Positives = 21/59 (35%)
Query: 10 ESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNP 68
E+G + P P G G + PP G GP K P GS G G P
Sbjct: 1169 ETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEP 1227
>gi|24308227 zinc finger protein 687 [Homo sapiens]
Length = 1237
Score = 30.0 bits (66), Expect = 0.41
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 34 EPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRT 65
EP PPA +GGPG+ GP + SS T
Sbjct: 1089 EPDSTTPPAKSPRGGPGSGGHGPLRYRSSSST 1120
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 24 LPLGKGGEDREPTRVDPPAGE----VQGGPGTHK 53
L LG G E+ P+R DP G+ GGP T K
Sbjct: 1170 LGLGDGEEEAPPSRSDPDGGDSPLPASGGPLTCK 1203
>gi|19718796 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 29.3 bits (64), Expect = 0.70
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 32 DREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPL 75
DRE +DP +G+ G H + SL G + P+ W+LPL
Sbjct: 592 DREHGMIDPDSGDEAQLNGGHSAEESL-GEPTQATVPETWSLPL 634
>gi|19718794 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 29.3 bits (64), Expect = 0.70
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 32 DREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPL 75
DRE +DP +G+ G H + SL G + P+ W+LPL
Sbjct: 592 DREHGMIDPDSGDEAQLNGGHSAEESL-GEPTQATVPETWSLPL 634
>gi|19718792 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 29.3 bits (64), Expect = 0.70
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 32 DREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPL 75
DRE +DP +G+ G H + SL G + P+ W+LPL
Sbjct: 592 DREHGMIDPDSGDEAQLNGGHSAEESL-GEPTQATVPETWSLPL 634
>gi|19718790 RAD17 homolog isoform 4 [Homo sapiens]
Length = 584
Score = 29.3 bits (64), Expect = 0.70
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 32 DREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPL 75
DRE +DP +G+ G H + SL G + P+ W+LPL
Sbjct: 506 DREHGMIDPDSGDEAQLNGGHSAEESL-GEPTQATVPETWSLPL 548
>gi|19718788 RAD17 homolog isoform 3 [Homo sapiens]
Length = 505
Score = 29.3 bits (64), Expect = 0.70
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 32 DREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPL 75
DRE +DP +G+ G H + SL G + P+ W+LPL
Sbjct: 427 DREHGMIDPDSGDEAQLNGGHSAEESL-GEPTQATVPETWSLPL 469
>gi|19718784 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 29.3 bits (64), Expect = 0.70
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 32 DREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPL 75
DRE +DP +G+ G H + SL G + P+ W+LPL
Sbjct: 592 DREHGMIDPDSGDEAQLNGGHSAEESL-GEPTQATVPETWSLPL 634
>gi|4506383 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 29.3 bits (64), Expect = 0.70
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 32 DREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPL 75
DRE +DP +G+ G H + SL G + P+ W+LPL
Sbjct: 592 DREHGMIDPDSGDEAQLNGGHSAEESL-GEPTQATVPETWSLPL 634
>gi|19718786 RAD17 homolog isoform 2 [Homo sapiens]
Length = 681
Score = 29.3 bits (64), Expect = 0.70
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 32 DREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPL 75
DRE +DP +G+ G H + SL G + P+ W+LPL
Sbjct: 603 DREHGMIDPDSGDEAQLNGGHSAEESL-GEPTQATVPETWSLPL 645
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 29.3 bits (64), Expect = 0.70
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 12 GKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSG 55
G L H+ G GG EP PPA + GPG H SG
Sbjct: 223 GGLSLHSAPSSDSDSGGGGLSPEPPEPPPPAAK---GPGAHASG 263
>gi|73476377 LBXCOR1 homolog [Homo sapiens]
Length = 921
Score = 28.9 bits (63), Expect = 0.91
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 35 PTRVDPP--AGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLP 74
P + DP AGE +GGPGT G G+ G G P LP
Sbjct: 363 PKKDDPVLGAGEPKGGPGTGSGGGGA-GTGGGAGGPGASHLP 403
>gi|21704287 sialidase 4 [Homo sapiens]
Length = 496
Score = 28.9 bits (63), Expect = 0.91
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 15/80 (18%)
Query: 6 RLRTESGKLESHNPQEWTLPLGKG-GEDREPTRVDPPAGEVQGGP---------GTHKSG 55
R R +S + +P + L LG G E E VDP G+V GGP G + G
Sbjct: 302 RPRDDSWSVGPGSPLQPPL-LGPGVHEPPEEAAVDPRGGQVPGGPFSRLQPRGDGPRQPG 360
Query: 56 PSLWGSSGRTGNPQEWTLPL 75
P G +G+ WTL L
Sbjct: 361 P----RPGVSGDVGSWTLAL 376
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/44 (34%), Positives = 18/44 (40%)
Query: 25 PLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNP 68
P G GE P + PP G + P GS GR G+P
Sbjct: 987 PSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSP 1030
Score = 26.6 bits (57), Expect = 4.5
Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 9/58 (15%)
Query: 11 SGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNP 68
+GK P+ T P G+ GE V PP GP K P G +G G P
Sbjct: 901 AGKEGGKGPRGETGPAGRPGE------VGPPG---PPGPAGEKGSPGADGPAGAPGTP 949
Score = 25.8 bits (55), Expect = 7.7
Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 11 SGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQE 70
+G S P T P G G+D P PP Q G P G++G G E
Sbjct: 541 TGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGV---MGFPGPKGAAGEPGKAGE 597
Query: 71 WTLP 74
+P
Sbjct: 598 RGVP 601
>gi|239747357 PREDICTED: hypothetical protein XP_002346431 [Homo
sapiens]
Length = 205
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 43 GEVQGGPGT---HKSGPSLWGSSGRTGNPQEWTLPLRKGREDQRTR 85
GE + PGT H++G G GRTG +E RKG R R
Sbjct: 39 GEPRAAPGTGRYHEAGTLESGVGGRTGTGREEGSVFRKGEGTWRRR 84
>gi|21536357 TBP-associated factor 6 isoform delta [Homo sapiens]
Length = 667
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 23 TLPLGKGGEDREPTRVDPPAGEVQGGPGTH-------KSGPSLWGSSGRTGNPQE 70
T P G G + PP GE +GGP +H S PS S G QE
Sbjct: 585 TAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPASSPSPLSGSALCGGKQE 639
>gi|21536355 TBP-associated factor 6 isoform gamma [Homo sapiens]
Length = 667
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 23 TLPLGKGGEDREPTRVDPPAGEVQGGPGTH-------KSGPSLWGSSGRTGNPQE 70
T P G G + PP GE +GGP +H S PS S G QE
Sbjct: 585 TAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPASSPSPLSGSALCGGKQE 639
>gi|5032147 TBP-associated factor 6 isoform alpha [Homo sapiens]
Length = 677
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 23 TLPLGKGGEDREPTRVDPPAGEVQGGPGTH-------KSGPSLWGSSGRTGNPQE 70
T P G G + PP GE +GGP +H S PS S G QE
Sbjct: 595 TAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPASSPSPLSGSALCGGKQE 649
>gi|21536359 TBP-associated factor 6 isoform alpha [Homo sapiens]
Length = 677
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 23 TLPLGKGGEDREPTRVDPPAGEVQGGPGTH-------KSGPSLWGSSGRTGNPQE 70
T P G G + PP GE +GGP +H S PS S G QE
Sbjct: 595 TAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPASSPSPLSGSALCGGKQE 649
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.134 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,175,457
Number of Sequences: 37866
Number of extensions: 292965
Number of successful extensions: 1036
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 869
Number of HSP's gapped (non-prelim): 221
length of query: 86
length of database: 18,247,518
effective HSP length: 58
effective length of query: 28
effective length of database: 16,051,290
effective search space: 449436120
effective search space used: 449436120
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.