Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239741928
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741928 PREDICTED: hypothetical protein XP_002342354 [Homo
sapiens]
(130 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239741928 PREDICTED: hypothetical protein XP_002342354 [Homo ... 283 4e-77
gi|239748036 PREDICTED: hypothetical protein XP_002346497 [Homo ... 216 5e-57
gi|239741930 PREDICTED: hypothetical protein XP_002342355 [Homo ... 176 6e-45
gi|239753468 PREDICTED: hypothetical protein [Homo sapiens] 172 5e-44
gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho... 32 0.14
gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 pre... 32 0.19
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 31 0.24
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 31 0.24
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 31 0.24
gi|157743252 pecanex-like 3 [Homo sapiens] 31 0.32
gi|239756205 PREDICTED: similar to hCG2029977 [Homo sapiens] 30 0.41
gi|239750739 PREDICTED: hypothetical protein XP_002347520 [Homo ... 30 0.41
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 30 0.41
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 30 0.41
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 30 0.54
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 30 0.54
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 30 0.54
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 30 0.54
gi|21687188 hypothetical protein LOC146325 [Homo sapiens] 30 0.54
gi|24308227 zinc finger protein 687 [Homo sapiens] 30 0.54
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 30 0.71
gi|21704287 sialidase 4 [Homo sapiens] 30 0.71
gi|71040098 Rho GTPase activating protein 30 isoform 1 [Homo sap... 30 0.71
gi|11386161 alpha 2 type IX collagen [Homo sapiens] 29 0.92
gi|19718796 RAD17 homolog isoform 1 [Homo sapiens] 29 0.92
gi|19718794 RAD17 homolog isoform 1 [Homo sapiens] 29 0.92
gi|19718792 RAD17 homolog isoform 1 [Homo sapiens] 29 0.92
gi|19718790 RAD17 homolog isoform 4 [Homo sapiens] 29 0.92
gi|19718788 RAD17 homolog isoform 3 [Homo sapiens] 29 0.92
gi|19718784 RAD17 homolog isoform 1 [Homo sapiens] 29 0.92
>gi|239741928 PREDICTED: hypothetical protein XP_002342354 [Homo
sapiens]
Length = 130
Score = 283 bits (723), Expect = 4e-77
Identities = 130/130 (100%), Positives = 130/130 (100%)
Query: 1 MLPTAGPGHSRPLCPAGEKPGVELHQGWVLSKVLEQGLGPATTKPLGPHMLRTESGKLES 60
MLPTAGPGHSRPLCPAGEKPGVELHQGWVLSKVLEQGLGPATTKPLGPHMLRTESGKLES
Sbjct: 1 MLPTAGPGHSRPLCPAGEKPGVELHQGWVLSKVLEQGLGPATTKPLGPHMLRTESGKLES 60
Query: 61 HNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPLR 120
HNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPLR
Sbjct: 61 HNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPLR 120
Query: 121 KGREDQRTRG 130
KGREDQRTRG
Sbjct: 121 KGREDQRTRG 130
>gi|239748036 PREDICTED: hypothetical protein XP_002346497 [Homo
sapiens]
Length = 123
Score = 216 bits (549), Expect = 5e-57
Identities = 99/103 (96%), Positives = 100/103 (97%)
Query: 28 WVLSKVLEQGLGPATTKPLGPHMLRTESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAG 87
W +VLEQGLGPATTKPLGPHMLRTESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAG
Sbjct: 21 WGYCQVLEQGLGPATTKPLGPHMLRTESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAG 80
Query: 88 EVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPLRKGREDQRTRG 130
EVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPLRKGREDQRTRG
Sbjct: 81 EVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPLRKGREDQRTRG 123
>gi|239741930 PREDICTED: hypothetical protein XP_002342355 [Homo
sapiens]
Length = 86
Score = 176 bits (445), Expect = 6e-45
Identities = 80/80 (100%), Positives = 80/80 (100%)
Query: 51 LRTESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTG 110
LRTESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTG
Sbjct: 7 LRTESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTG 66
Query: 111 NPQEWTLPLRKGREDQRTRG 130
NPQEWTLPLRKGREDQRTRG
Sbjct: 67 NPQEWTLPLRKGREDQRTRG 86
>gi|239753468 PREDICTED: hypothetical protein [Homo sapiens]
Length = 86
Score = 172 bits (437), Expect = 5e-44
Identities = 79/80 (98%), Positives = 79/80 (98%)
Query: 51 LRTESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTG 110
LRTESGKLES NPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTG
Sbjct: 7 LRTESGKLESQNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTG 66
Query: 111 NPQEWTLPLRKGREDQRTRG 130
NPQEWTLPLRKGREDQRTRG
Sbjct: 67 NPQEWTLPLRKGREDQRTRG 86
>gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Homo
sapiens]
Length = 406
Score = 32.0 bits (71), Expect = 0.14
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 58 LESHNPQEWTLP--LGKGGEDREPTRVDPPAG-EVQGGPGTHKSGPS----LWGSSGRTG 110
+E N ++ T+ + +GGED E TR P G E + GT S PS G G
Sbjct: 23 IEEVNDEKLTVTSLMARGGEDEENTRSKPEYGTEAENNVGTEGSVPSDDQDREGGGGHEP 82
Query: 111 NPQEWTLPLRKGREDQ 126
Q+ PL K + Q
Sbjct: 83 EQQQEEPPLTKPEQQQ 98
>gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3
preproprotein [Homo sapiens]
Length = 178
Score = 31.6 bits (70), Expect = 0.19
Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 15/97 (15%)
Query: 3 PTAGPGHSRPLCPAGEKPGVELHQGWVLSKVLEQGLGPATTKPLGPHMLRTESGKLESHN 62
P + PG + P G KP QG S+ G KP GP + E +N
Sbjct: 90 PRSPPGKPQGPPPQGGKPQGPPAQGGSKSQSARSPPG----KPQGPP-------QQEGNN 138
Query: 63 PQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSG 99
PQ P G G ++P PPAG+ QG P + G
Sbjct: 139 PQGPPPPAG--GNPQQPQA--PPAGQPQGPPRPPQGG 171
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 31.2 bits (69), Expect = 0.24
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 69 PLGKGGEDREPTRVDPPAGEV-------QGGPGTHKSGPSLWGSSGRTGNPQEWT 116
P GK G+D +P PAGE + GP P L G G +G+P WT
Sbjct: 1389 PRGKPGKDGKPG-TPGPAGEKGNKGSKGEPGPAGSDGLPGLKGKRGDSGSPATWT 1442
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 31.2 bits (69), Expect = 0.24
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 69 PLGKGGEDREPTRVDPPAGEV-------QGGPGTHKSGPSLWGSSGRTGNPQEWT 116
P GK G+D +P PAGE + GP P L G G +G+P WT
Sbjct: 1389 PRGKPGKDGKPG-TPGPAGEKGNKGSKGEPGPAGSDGLPGLKGKRGDSGSPATWT 1442
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 31.2 bits (69), Expect = 0.24
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 69 PLGKGGEDREPTRVDPPAGEV-------QGGPGTHKSGPSLWGSSGRTGNPQEWT 116
P GK G+D +P PAGE + GP P L G G +G+P WT
Sbjct: 1389 PRGKPGKDGKPG-TPGPAGEKGNKGSKGEPGPAGSDGLPGLKGKRGDSGSPATWT 1442
>gi|157743252 pecanex-like 3 [Homo sapiens]
Length = 2034
Score = 30.8 bits (68), Expect = 0.32
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 12/53 (22%)
Query: 39 GPATTKPLGPHMLRTE--SGKLESHNPQEWTL--PLGKGGEDREPTRVDPPAG 87
GP T++P GP +L +E SGK W+L G GG D EP P G
Sbjct: 1915 GPRTSRPPGPGLLSSEGPSGK--------WSLGGRKGLGGSDGEPASGSPKGG 1959
>gi|239756205 PREDICTED: similar to hCG2029977 [Homo sapiens]
Length = 259
Score = 30.4 bits (67), Expect = 0.41
Identities = 21/51 (41%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 28 WVLSKVLEQGLGPATTKPLGPHML--RTESGKLESHNPQEWT-LPLGKGGE 75
WVLS+V Q GP KP G L G + S N W P GKG E
Sbjct: 136 WVLSQVQLQESGPGLVKPSGTLSLTCAVSGGSISSSNWWSWVRQPPGKGLE 186
>gi|239750739 PREDICTED: hypothetical protein XP_002347520 [Homo
sapiens]
Length = 149
Score = 30.4 bits (67), Expect = 0.41
Identities = 21/51 (41%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 28 WVLSKVLEQGLGPATTKPLGPHML--RTESGKLESHNPQEWT-LPLGKGGE 75
WVLS+V Q GP KP G L G + S N W P GKG E
Sbjct: 23 WVLSQVQLQESGPGLVKPSGTLSLTCAVSGGSISSSNWWSWVRQPPGKGLE 73
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 30.4 bits (67), Expect = 0.41
Identities = 20/69 (28%), Positives = 28/69 (40%)
Query: 54 ESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQ 113
E G+ PQ P G G P R PP + + GPG P + G G +G
Sbjct: 344 EDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAG 403
Query: 114 EWTLPLRKG 122
+ +P +G
Sbjct: 404 KPGVPGERG 412
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 30.4 bits (67), Expect = 0.41
Identities = 34/109 (31%), Positives = 42/109 (38%), Gaps = 19/109 (17%)
Query: 3 PTAGPGHSRPLCPAGEKPGVELHQGWVLSKVLEQGLGPATTKPLGP--------HMLRTE 54
P + PG + P G KP QG QG P KP GP R+
Sbjct: 90 PRSPPGKPQGPPPQGGKPQGPPPQGGNKP----QG-PPPPGKPQGPPAQGGSKSQSARSP 144
Query: 55 SGKLESHNPQEWTLPLGK----GGEDREPTRVDPPAGEVQGGPGTHKSG 99
GK + QE P G GG ++P PPAG+ QG P + G
Sbjct: 145 PGKPQGPPQQEGNNPQGPPPPAGGNPQQPQA--PPAGQPQGPPRPPQGG 191
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 30.0 bits (66), Expect = 0.54
Identities = 24/78 (30%), Positives = 28/78 (35%), Gaps = 9/78 (11%)
Query: 37 GLGPATTKPLGPHMLRTESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTH 96
GL P + P+GP G Q P G GE +P + P GP
Sbjct: 209 GLMPGSVGPVGPR------GPQGLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGP--- 259
Query: 97 KSGPSLWGSSGRTGNPQE 114
P G GR GNP E
Sbjct: 260 PGKPGEDGEPGRNGNPGE 277
Score = 26.2 bits (56), Expect = 7.8
Identities = 40/127 (31%), Positives = 46/127 (36%), Gaps = 38/127 (29%)
Query: 3 PTAGPGHSRPLCPAGE--KPGVELHQGWVLSKVLEQGL--GPATTKPLGPHMLRTESGKL 58
PT G P P GE KPG +QG+ P PLGP R E G
Sbjct: 673 PTGFQGLPGPPGPPGEGGKPG-------------DQGVPGDPGAVGPLGP---RGERG-- 714
Query: 59 ESHNPQEWTLPLGKGGEDREP--TRVDPPAGEVQG-GPGTHKSGPSLWGSSGRTGNPQEW 115
NP GE EP T + G G GP K P G+ G TG P
Sbjct: 715 ---NP----------GERGEPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQ 761
Query: 116 TLPLRKG 122
+P +G
Sbjct: 762 GMPGERG 768
Score = 26.2 bits (56), Expect = 7.8
Identities = 32/114 (28%), Positives = 40/114 (35%), Gaps = 11/114 (9%)
Query: 3 PTAGPGHSRPLCPAGEKPGVELHQGWVLSKVLEQGLGP----ATTKPLGPHMLRTESGKL 58
PT G + P P G+ PGV+ G K GP + P GP+ + G
Sbjct: 841 PTGAVGFAGPQGPDGQ-PGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGR 899
Query: 59 ESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNP 112
+ P T G G RV PP GP P G G G+P
Sbjct: 900 GTQGPPGATGFPGSAG------RVGPPGPAGAPGPAGPLGEPGKEGPPGLRGDP 947
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 30.0 bits (66), Expect = 0.54
Identities = 35/121 (28%), Positives = 45/121 (37%), Gaps = 15/121 (12%)
Query: 7 PGHSRPLCPAGE--------KPGVELHQGWVLSKVLE--QGL----GPATTKPL-GPHML 51
PG P+ P G+ +PG QG +K E +G GP + L GP
Sbjct: 1021 PGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGE 1080
Query: 52 RTESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGN 111
+ E+G + P P G G + PP G GP K P GS G G
Sbjct: 1081 KGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGE 1140
Query: 112 P 112
P
Sbjct: 1141 P 1141
Score = 30.0 bits (66), Expect = 0.54
Identities = 17/51 (33%), Positives = 20/51 (39%)
Query: 69 PLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPL 119
P+G GG P P + GPG K + G G G P E PL
Sbjct: 1368 PIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEVIQPL 1418
Score = 26.9 bits (58), Expect = 4.6
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 69 PLGKGGEDREPTRVDPPAGEVQGGPGTHKSG-----PSLWGSSGRTGNPQEWTLPLRKG 122
P G GE EP ++P V+G PG P + G+ G G+P E P R G
Sbjct: 292 PRGLKGEKGEPAVLEPGM-LVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAG 349
Score = 26.9 bits (58), Expect = 4.6
Identities = 31/118 (26%), Positives = 40/118 (33%), Gaps = 10/118 (8%)
Query: 3 PTAGPGHSRPLCPAGEKPGVELHQGWVLSKVLEQGLGP-ATTKPLGPHMLRTESGKLESH 61
P PG P P G K G+ H G + GP +GP E+G +
Sbjct: 798 PNGFPGPKGPPGPPG-KDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGER 856
Query: 62 N-------PQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNP 112
P E LP G G++ PP + GP + P G G G P
Sbjct: 857 GHPGPPGPPGEQGLP-GTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGP 913
Score = 26.6 bits (57), Expect = 6.0
Identities = 37/117 (31%), Positives = 39/117 (33%), Gaps = 17/117 (14%)
Query: 3 PTAGPGHSRPLCPAGEK--PGVELHQGWVLSKVLEQGLGPATTKPLGPHMLRTESGKLES 60
P PG L P GEK PG G QG P P G + ESG+
Sbjct: 1110 PQGPPGGVGNLGPPGEKGEPGESGSPGI-------QG-EPGVKGPRGERGEKGESGQPGE 1161
Query: 61 HNPQEWTLPLGKGGEDREPTRV----DP-PAGEVQGGPGTHKSGPSLWGSSGRTGNP 112
P P G G P V DP P GE GGP G G G P
Sbjct: 1162 PGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGE--GGPRGQDGAKGDRGEDGEPGQP 1216
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 30.0 bits (66), Expect = 0.54
Identities = 35/121 (28%), Positives = 45/121 (37%), Gaps = 15/121 (12%)
Query: 7 PGHSRPLCPAGE--------KPGVELHQGWVLSKVLE--QGL----GPATTKPL-GPHML 51
PG P+ P G+ +PG QG +K E +G GP + L GP
Sbjct: 1000 PGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGE 1059
Query: 52 RTESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGN 111
+ E+G + P P G G + PP G GP K P GS G G
Sbjct: 1060 KGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGE 1119
Query: 112 P 112
P
Sbjct: 1120 P 1120
Score = 30.0 bits (66), Expect = 0.54
Identities = 17/51 (33%), Positives = 20/51 (39%)
Query: 69 PLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPL 119
P+G GG P P + GPG K + G G G P E PL
Sbjct: 1347 PIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEVIQPL 1397
Score = 26.9 bits (58), Expect = 4.6
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 69 PLGKGGEDREPTRVDPPAGEVQGGPGTHKSG-----PSLWGSSGRTGNPQEWTLPLRKG 122
P G GE EP ++P V+G PG P + G+ G G+P E P R G
Sbjct: 271 PRGLKGEKGEPAVLEPGM-LVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAG 328
Score = 26.9 bits (58), Expect = 4.6
Identities = 31/118 (26%), Positives = 40/118 (33%), Gaps = 10/118 (8%)
Query: 3 PTAGPGHSRPLCPAGEKPGVELHQGWVLSKVLEQGLGP-ATTKPLGPHMLRTESGKLESH 61
P PG P P G K G+ H G + GP +GP E+G +
Sbjct: 777 PNGFPGPKGPPGPPG-KDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGER 835
Query: 62 N-------PQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNP 112
P E LP G G++ PP + GP + P G G G P
Sbjct: 836 GHPGPPGPPGEQGLP-GTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGP 892
Score = 26.6 bits (57), Expect = 6.0
Identities = 37/117 (31%), Positives = 39/117 (33%), Gaps = 17/117 (14%)
Query: 3 PTAGPGHSRPLCPAGEK--PGVELHQGWVLSKVLEQGLGPATTKPLGPHMLRTESGKLES 60
P PG L P GEK PG G QG P P G + ESG+
Sbjct: 1089 PQGPPGGVGNLGPPGEKGEPGESGSPGI-------QG-EPGVKGPRGERGEKGESGQPGE 1140
Query: 61 HNPQEWTLPLGKGGEDREPTRV----DP-PAGEVQGGPGTHKSGPSLWGSSGRTGNP 112
P P G G P V DP P GE GGP G G G P
Sbjct: 1141 PGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGE--GGPRGQDGAKGDRGEDGEPGQP 1195
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 30.0 bits (66), Expect = 0.54
Identities = 35/121 (28%), Positives = 45/121 (37%), Gaps = 15/121 (12%)
Query: 7 PGHSRPLCPAGE--------KPGVELHQGWVLSKVLE--QGL----GPATTKPL-GPHML 51
PG P+ P G+ +PG QG +K E +G GP + L GP
Sbjct: 1107 PGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGE 1166
Query: 52 RTESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGN 111
+ E+G + P P G G + PP G GP K P GS G G
Sbjct: 1167 KGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGE 1226
Query: 112 P 112
P
Sbjct: 1227 P 1227
Score = 30.0 bits (66), Expect = 0.54
Identities = 17/51 (33%), Positives = 20/51 (39%)
Query: 69 PLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPL 119
P+G GG P P + GPG K + G G G P E PL
Sbjct: 1454 PIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEVIQPL 1504
Score = 26.9 bits (58), Expect = 4.6
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 69 PLGKGGEDREPTRVDPPAGEVQGGPGTHKSG-----PSLWGSSGRTGNPQEWTLPLRKG 122
P G GE EP ++P V+G PG P + G+ G G+P E P R G
Sbjct: 378 PRGLKGEKGEPAVLEPGM-LVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAG 435
Score = 26.9 bits (58), Expect = 4.6
Identities = 31/118 (26%), Positives = 40/118 (33%), Gaps = 10/118 (8%)
Query: 3 PTAGPGHSRPLCPAGEKPGVELHQGWVLSKVLEQGLGP-ATTKPLGPHMLRTESGKLESH 61
P PG P P G K G+ H G + GP +GP E+G +
Sbjct: 884 PNGFPGPKGPPGPPG-KDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGER 942
Query: 62 N-------PQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNP 112
P E LP G G++ PP + GP + P G G G P
Sbjct: 943 GHPGPPGPPGEQGLP-GTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGP 999
Score = 26.6 bits (57), Expect = 6.0
Identities = 37/117 (31%), Positives = 39/117 (33%), Gaps = 17/117 (14%)
Query: 3 PTAGPGHSRPLCPAGEK--PGVELHQGWVLSKVLEQGLGPATTKPLGPHMLRTESGKLES 60
P PG L P GEK PG G QG P P G + ESG+
Sbjct: 1196 PQGPPGGVGNLGPPGEKGEPGESGSPGI-------QG-EPGVKGPRGERGEKGESGQPGE 1247
Query: 61 HNPQEWTLPLGKGGEDREPTRV----DP-PAGEVQGGPGTHKSGPSLWGSSGRTGNP 112
P P G G P V DP P GE GGP G G G P
Sbjct: 1248 PGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGE--GGPRGQDGAKGDRGEDGEPGQP 1302
>gi|21687188 hypothetical protein LOC146325 [Homo sapiens]
Length = 571
Score = 30.0 bits (66), Expect = 0.54
Identities = 36/122 (29%), Positives = 46/122 (37%), Gaps = 25/122 (20%)
Query: 4 TAGPGHSRPLCPAGEKPGVELHQGWVLSKVL------EQGLGP-ATTKPLGPHMLRTESG 56
T GP PL P G PG H G L++ L EQ LG L P LR + G
Sbjct: 382 TPGPEGPLPLQPRGPVPGSPEHVGEDLTRALGDYARVEQRLGQLGPAGGLAPRPLREQLG 441
Query: 57 KL------------ESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWG 104
K+ ++ P + L L R P + GE G P + GP L G
Sbjct: 442 KIRLELLTIHQALEQAVRPPDAPLDL---SVKRAPAKGPQALGEAWGRP---ELGPVLTG 495
Query: 105 SS 106
+
Sbjct: 496 GT 497
>gi|24308227 zinc finger protein 687 [Homo sapiens]
Length = 1237
Score = 30.0 bits (66), Expect = 0.54
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 78 EPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRT 109
EP PPA +GGPG+ GP + SS T
Sbjct: 1089 EPDSTTPPAKSPRGGPGSGGHGPLRYRSSSST 1120
Score = 26.9 bits (58), Expect = 4.6
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 68 LPLGKGGEDREPTRVDPPAGE----VQGGPGTHK 97
L LG G E+ P+R DP G+ GGP T K
Sbjct: 1170 LGLGDGEEEAPPSRSDPDGGDSPLPASGGPLTCK 1203
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 29.6 bits (65), Expect = 0.71
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 45 PLGPHMLRTESGKLESHNPQEWTLPLGKGGEDREPTRVDPPA--GEVQGGPGTHKSGPSL 102
P G L +G+ + P+ P G+ GE EP R PA G GP K
Sbjct: 1502 PAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGP 1561
Query: 103 WGSSGRTG 110
G G TG
Sbjct: 1562 AGPRGATG 1569
>gi|21704287 sialidase 4 [Homo sapiens]
Length = 496
Score = 29.6 bits (65), Expect = 0.71
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 15/82 (18%)
Query: 48 PHMLRTESGKLESHNPQEWTLPLGKG-GEDREPTRVDPPAGEVQGGP---------GTHK 97
P+ R +S + +P + L LG G E E VDP G+V GGP G +
Sbjct: 300 PNRPRDDSWSVGPGSPLQPPL-LGPGVHEPPEEAAVDPRGGQVPGGPFSRLQPRGDGPRQ 358
Query: 98 SGPSLWGSSGRTGNPQEWTLPL 119
GP G +G+ WTL L
Sbjct: 359 PGP----RPGVSGDVGSWTLAL 376
>gi|71040098 Rho GTPase activating protein 30 isoform 1 [Homo
sapiens]
Length = 1101
Score = 29.6 bits (65), Expect = 0.71
Identities = 34/123 (27%), Positives = 45/123 (36%), Gaps = 16/123 (13%)
Query: 16 AGEKPGVELHQGWVLSKVLEQGLGPATTKPLGPHM-LRTESGKLESHNPQEWTLPLGKGG 74
AG +P VE G + L P LGP + SG LE LG+GG
Sbjct: 594 AGPRPEVEEENGEEVFLSAYDDLSPL----LGPKPPIWKGSGSLEGEAAGCGRQALGQGG 649
Query: 75 EDREPTRVDP-----PAG------EVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPLRKGR 123
E++ V P G E +G P T G G QE + LR+G
Sbjct: 650 EEQACWEVGEDKQAEPGGRLDIREEAEGSPETKVEAGKASEDRGEAGGSQETKVRLREGS 709
Query: 124 EDQ 126
++
Sbjct: 710 REE 712
>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
Length = 689
Score = 29.3 bits (64), Expect = 0.92
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 40 PATTKPLGPHMLRTESGKLESHNPQEWTLPLGKGGEDRE--PTRVDPPAGEVQGGPGTH- 96
P +GP + + G P P G+ G E P + P QG PG
Sbjct: 372 PGPRGEIGPQGIMGQKGDQGERGPVGQPGPQGRQGPKGEQGPPGIPGP----QGLPGVKG 427
Query: 97 -KSGPSLWGSSGRTGNPQEWTLPLRKGREDQ 126
K P G G+ G+P LP KG + +
Sbjct: 428 DKGSPGKTGPRGKVGDPGVAGLPGEKGEKGE 458
>gi|19718796 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 29.3 bits (64), Expect = 0.92
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 76 DREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPL 119
DRE +DP +G+ G H + SL G + P+ W+LPL
Sbjct: 592 DREHGMIDPDSGDEAQLNGGHSAEESL-GEPTQATVPETWSLPL 634
>gi|19718794 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 29.3 bits (64), Expect = 0.92
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 76 DREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPL 119
DRE +DP +G+ G H + SL G + P+ W+LPL
Sbjct: 592 DREHGMIDPDSGDEAQLNGGHSAEESL-GEPTQATVPETWSLPL 634
>gi|19718792 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 29.3 bits (64), Expect = 0.92
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 76 DREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPL 119
DRE +DP +G+ G H + SL G + P+ W+LPL
Sbjct: 592 DREHGMIDPDSGDEAQLNGGHSAEESL-GEPTQATVPETWSLPL 634
>gi|19718790 RAD17 homolog isoform 4 [Homo sapiens]
Length = 584
Score = 29.3 bits (64), Expect = 0.92
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 76 DREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPL 119
DRE +DP +G+ G H + SL G + P+ W+LPL
Sbjct: 506 DREHGMIDPDSGDEAQLNGGHSAEESL-GEPTQATVPETWSLPL 548
>gi|19718788 RAD17 homolog isoform 3 [Homo sapiens]
Length = 505
Score = 29.3 bits (64), Expect = 0.92
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 76 DREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPL 119
DRE +DP +G+ G H + SL G + P+ W+LPL
Sbjct: 427 DREHGMIDPDSGDEAQLNGGHSAEESL-GEPTQATVPETWSLPL 469
>gi|19718784 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 29.3 bits (64), Expect = 0.92
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 76 DREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPL 119
DRE +DP +G+ G H + SL G + P+ W+LPL
Sbjct: 592 DREHGMIDPDSGDEAQLNGGHSAEESL-GEPTQATVPETWSLPL 634
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.136 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,879,969
Number of Sequences: 37866
Number of extensions: 475436
Number of successful extensions: 1462
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 119
Number of HSP's that attempted gapping in prelim test: 1272
Number of HSP's gapped (non-prelim): 299
length of query: 130
length of database: 18,247,518
effective HSP length: 90
effective length of query: 40
effective length of database: 14,839,578
effective search space: 593583120
effective search space used: 593583120
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.