Guide to the Human Genome
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Search of human proteins with 116292178

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|116292178 hypothetical protein LOC414918 [Homo sapiens]
         (585 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|116292178 hypothetical protein LOC414918 [Homo sapiens]           1198   0.0  
gi|32698777 hypothetical protein LOC201627 [Homo sapiens]             721   0.0  
gi|29788755 SET binding factor 2 [Homo sapiens]                        39   0.013
gi|57529131 AVL9 homolog (S. cerevisiase) [Homo sapiens]               37   0.039
gi|151301053 RNA binding motif protein 33 [Homo sapiens]               32   1.2  
gi|239735519 SET binding factor 1 [Homo sapiens]                       31   2.8  
gi|51873064 mannosidase, alpha, class 2B, member 1 precursor [Ho...    31   3.6  
gi|5031927 skeletal muscle receptor tyrosine kinase [Homo sapiens]     30   6.2  

>gi|116292178 hypothetical protein LOC414918 [Homo sapiens]
          Length = 585

 Score = 1198 bits (3099), Expect = 0.0
 Identities = 585/585 (100%), Positives = 585/585 (100%)

Query: 1   MDALLGTGPRRARGCLGAAGPTSSGRAARTPAAPWARFSAWLECVCVVTFDLELGQALQL 60
           MDALLGTGPRRARGCLGAAGPTSSGRAARTPAAPWARFSAWLECVCVVTFDLELGQALQL
Sbjct: 1   MDALLGTGPRRARGCLGAAGPTSSGRAARTPAAPWARFSAWLECVCVVTFDLELGQALQL 60

Query: 61  VYPNDFRLTDKEKSSICYLSFPDSHSGCLGDTQFSFRMRQCGGQRSPWHADDRHYNSRAP 120
           VYPNDFRLTDKEKSSICYLSFPDSHSGCLGDTQFSFRMRQCGGQRSPWHADDRHYNSRAP
Sbjct: 61  VYPNDFRLTDKEKSSICYLSFPDSHSGCLGDTQFSFRMRQCGGQRSPWHADDRHYNSRAP 120

Query: 121 VALQREPAHYFGYVYFRQVKDSSVKRGYFQKSLVLVSRLPFVRLFQALLSLIAPEYFDKL 180
           VALQREPAHYFGYVYFRQVKDSSVKRGYFQKSLVLVSRLPFVRLFQALLSLIAPEYFDKL
Sbjct: 121 VALQREPAHYFGYVYFRQVKDSSVKRGYFQKSLVLVSRLPFVRLFQALLSLIAPEYFDKL 180

Query: 181 APCLEAVCSEIDQWPAPAPGQTLNLPVMGVVVQVRIPSRVDKSESSPPKQFDQENLLPAP 240
           APCLEAVCSEIDQWPAPAPGQTLNLPVMGVVVQVRIPSRVDKSESSPPKQFDQENLLPAP
Sbjct: 181 APCLEAVCSEIDQWPAPAPGQTLNLPVMGVVVQVRIPSRVDKSESSPPKQFDQENLLPAP 240

Query: 241 VVLASVHELDLFRCFRPVLTHMQTLWELMLLGEPLLVLAPSPDVSSEMVLALTSCLQPLR 300
           VVLASVHELDLFRCFRPVLTHMQTLWELMLLGEPLLVLAPSPDVSSEMVLALTSCLQPLR
Sbjct: 241 VVLASVHELDLFRCFRPVLTHMQTLWELMLLGEPLLVLAPSPDVSSEMVLALTSCLQPLR 300

Query: 301 FCCDFRPYFTIHDSEFKEFTTRTQAPPNVVLGVTNPFFIKTLQHWPHILRVGEPKMSGDL 360
           FCCDFRPYFTIHDSEFKEFTTRTQAPPNVVLGVTNPFFIKTLQHWPHILRVGEPKMSGDL
Sbjct: 301 FCCDFRPYFTIHDSEFKEFTTRTQAPPNVVLGVTNPFFIKTLQHWPHILRVGEPKMSGDL 360

Query: 361 PKQVKLKKPSRLKTLDTKPGLYTAYTAHLHRDKALLKRLLKGVQKKRPSDVQSALLRRHL 420
           PKQVKLKKPSRLKTLDTKPGLYTAYTAHLHRDKALLKRLLKGVQKKRPSDVQSALLRRHL
Sbjct: 361 PKQVKLKKPSRLKTLDTKPGLYTAYTAHLHRDKALLKRLLKGVQKKRPSDVQSALLRRHL 420

Query: 421 LELTQSFIIPLEHYMASLMPLQKSITPWKTPPQIQPFSQDDFLRSLEHAGPQLTCILKGD 480
           LELTQSFIIPLEHYMASLMPLQKSITPWKTPPQIQPFSQDDFLRSLEHAGPQLTCILKGD
Sbjct: 421 LELTQSFIIPLEHYMASLMPLQKSITPWKTPPQIQPFSQDDFLRSLEHAGPQLTCILKGD 480

Query: 481 WLGLYRRFFKSPHFDGWYRQRHKEMALKLEALHLEAICEANIETWMKDKSEVEVVDLVLK 540
           WLGLYRRFFKSPHFDGWYRQRHKEMALKLEALHLEAICEANIETWMKDKSEVEVVDLVLK
Sbjct: 481 WLGLYRRFFKSPHFDGWYRQRHKEMALKLEALHLEAICEANIETWMKDKSEVEVVDLVLK 540

Query: 541 LREKLVRAQGHQLPVKEATLQRAQLYIETVIGSLPKDLQAVLCPP 585
           LREKLVRAQGHQLPVKEATLQRAQLYIETVIGSLPKDLQAVLCPP
Sbjct: 541 LREKLVRAQGHQLPVKEATLQRAQLYIETVIGSLPKDLQAVLCPP 585


>gi|32698777 hypothetical protein LOC201627 [Homo sapiens]
          Length = 608

 Score =  721 bits (1862), Expect = 0.0
 Identities = 332/548 (60%), Positives = 440/548 (80%)

Query: 35  WARFSAWLECVCVVTFDLELGQALQLVYPNDFRLTDKEKSSICYLSFPDSHSGCLGDTQF 94
           W  FSAWL CVCVV FDLELGQA++++YP   +LTD+EK++ICYLSFPDS+SGCLGDTQF
Sbjct: 55  WDSFSAWLHCVCVVGFDLELGQAVEVIYPQHSKLTDREKTNICYLSFPDSNSGCLGDTQF 114

Query: 95  SFRMRQCGGQRSPWHADDRHYNSRAPVALQREPAHYFGYVYFRQVKDSSVKRGYFQKSLV 154
            FR RQ  G+R   H     ++   PV L+++PA+++GYVYFRQV+D ++KRGYFQKSLV
Sbjct: 115 CFRFRQSSGRRVSLHCLLDQFDKDLPVYLKKDPAYFYGYVYFRQVRDKTLKRGYFQKSLV 174

Query: 155 LVSRLPFVRLFQALLSLIAPEYFDKLAPCLEAVCSEIDQWPAPAPGQTLNLPVMGVVVQV 214
           L+S+LP++  F  +L  IAPEYF+K  P LEA C+++D+WPAP PG+TL+LP+MGVV++V
Sbjct: 175 LISKLPYIHFFHTVLKQIAPEYFEKNEPYLEAACNDVDRWPAPVPGKTLHLPIMGVVMKV 234

Query: 215 RIPSRVDKSESSPPKQFDQENLLPAPVVLASVHELDLFRCFRPVLTHMQTLWELMLLGEP 274
           RIP+  DK  ++   Q  Q+      V+L +VHE+D+FRCF PV  H Q LWEL+LLGEP
Sbjct: 235 RIPTCHDKPGTTQIVQLTQQVDTNISVILPTVHEVDIFRCFCPVFLHSQMLWELVLLGEP 294

Query: 275 LLVLAPSPDVSSEMVLALTSCLQPLRFCCDFRPYFTIHDSEFKEFTTRTQAPPNVVLGVT 334
           L+V+APSP  SSE VLAL +C+ PL++  DFRPYFTIHDSEFKE+TTRTQAPP+V+LGVT
Sbjct: 295 LVVMAPSPSESSETVLALVNCISPLKYFSDFRPYFTIHDSEFKEYTTRTQAPPSVILGVT 354

Query: 335 NPFFIKTLQHWPHILRVGEPKMSGDLPKQVKLKKPSRLKTLDTKPGLYTAYTAHLHRDKA 394
           NPFF KTLQHWPHI+R+G+ K +G++PKQVK+KK   LKTLD+KPG+YT+Y  +L+RD+ 
Sbjct: 355 NPFFAKTLQHWPHIIRIGDLKPTGEIPKQVKVKKLKNLKTLDSKPGVYTSYKPYLNRDEE 414

Query: 395 LLKRLLKGVQKKRPSDVQSALLRRHLLELTQSFIIPLEHYMASLMPLQKSITPWKTPPQI 454
           ++K+L KGVQ+KRPS+ QS +LRR+ LELTQSFIIPLE Y+ASLMPLQKSI+PWK+PPQ+
Sbjct: 415 IIKQLQKGVQQKRPSEAQSVILRRYFLELTQSFIIPLERYVASLMPLQKSISPWKSPPQL 474

Query: 455 QPFSQDDFLRSLEHAGPQLTCILKGDWLGLYRRFFKSPHFDGWYRQRHKEMALKLEALHL 514
           + F  ++F+++LE  GPQLT  +KGDW+GLYR F KSP+FDGW++ R KEM  KLEALHL
Sbjct: 475 RQFLPEEFMKTLEKTGPQLTSRIKGDWIGLYRHFLKSPNFDGWFKTRRKEMTQKLEALHL 534

Query: 515 EAICEANIETWMKDKSEVEVVDLVLKLREKLVRAQGHQLPVKEATLQRAQLYIETVIGSL 574
           EA+CE ++  W++  +EVE VDLVLKL+ KL++A    LPVK  T+++ + +I+ +I +L
Sbjct: 535 EALCEEDLLLWIQKHTEVETVDLVLKLKNKLLQADREHLPVKPDTMEKLRTHIDAIILAL 594

Query: 575 PKDLQAVL 582
           P+DLQ +L
Sbjct: 595 PEDLQGIL 602


>gi|29788755 SET binding factor 2 [Homo sapiens]
          Length = 1849

 Score = 38.9 bits (89), Expect = 0.013
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 151 KSLVLVSRLPFVRLFQALLSLIAPEYFDKLAPCLEAVCSEIDQWPAPAPGQTLNLPVMG 209
           KSLVLVSRL +  +F+A L LI   Y D L   LE++ + +     PA G +  L  +G
Sbjct: 119 KSLVLVSRLYYPEIFRACLGLIYTVYVDSLNVSLESLIANLCACLVPAAGGSQKLFSLG 177


>gi|57529131 AVL9 homolog (S. cerevisiase) [Homo sapiens]
          Length = 648

 Score = 37.4 bits (85), Expect = 0.039
 Identities = 38/149 (25%), Positives = 60/149 (40%), Gaps = 37/149 (24%)

Query: 45  VCVVTFDLELGQALQLVYP-------NDFRLTDKEKSSICYLSFPDSHSGCLGDTQFSFR 97
           + VV F  + G  ++  YP       +D     +E   + +L+ PD       DT F   
Sbjct: 19  IVVVGFHHKKGCQVEFSYPPLIPGDGHDSHTLPEEWKYLPFLALPDGAHNYQEDTVF--- 75

Query: 98  MRQCGGQRSPWHADDRHYNSRAPVALQREPAHYFGYVYFRQVKDSSVK-------RGYFQ 150
                     +H   R+ N           A  FG   +RQ++  ++K       R   Q
Sbjct: 76  ----------FHLPPRNGNG----------ATVFGISCYRQIEAKALKVRQADITRETVQ 115

Query: 151 KSLVLVSRLPFVRLFQALLSLIAPEYFDK 179
           KS+ ++S+LP   L QA L LI   YF++
Sbjct: 116 KSVCVLSKLPLYGLLQAKLQLITHAYFEE 144


>gi|151301053 RNA binding motif protein 33 [Homo sapiens]
          Length = 1170

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 192 DQWPAPAPGQTLNLPVMGVVVQVRIPSRVDKSESSPPKQFDQENLLPAPVVLASVH 247
           DQW AP P Q  +   +GV  + R PS +   + SPP         P P +L S H
Sbjct: 447 DQWRAPPPPQDRDPFFLGVSGEPRFPSHLFLEQRSPPPP------PPPPTLLNSSH 496


>gi|239735519 SET binding factor 1 [Homo sapiens]
          Length = 1893

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 4/87 (4%)

Query: 151 KSLVLVSRLPFVRLFQALLSLIAPEYFDKLAPCLEAVCSEIDQWPAPAPGQTLNLPVMGV 210
           K+LVLVSRL    +F+  L LI   + + L  CLE V   +     P  G +     +G 
Sbjct: 131 KTLVLVSRLDHTEVFRNSLGLIYAIHVEGLNVCLENVIGNLLTCTVPLAGGSQRTISLGA 190

Query: 211 ----VVQVRIPSRVDKSESSPPKQFDQ 233
               V+Q  +   +  S  S    F Q
Sbjct: 191 GDRQVIQTPLADSLPVSRCSVALLFRQ 217


>gi|51873064 mannosidase, alpha, class 2B, member 1 precursor
          [Homo sapiens]
          Length = 1011

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 12 ARGCLGAAGPTSSGRAARTPAAPWARF 38
          ARGCL +AGP +  RA R P  P   F
Sbjct: 12 ARGCLDSAGPWTMSRALRPPLPPLCFF 38


>gi|5031927 skeletal muscle receptor tyrosine kinase [Homo sapiens]
          Length = 869

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 352 GEPKMSGDLPKQVKLKK-PSRLKTLDTKPGLYTAYTAHLHRDK 393
           G    SG + + VK +   SRL+   TKPGLYT    + H +K
Sbjct: 249 GNAVSSGSIQESVKDRVIDSRLQLFITKPGLYTCIATNKHGEK 291


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.138    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,983,948
Number of Sequences: 37866
Number of extensions: 1110599
Number of successful extensions: 2891
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2882
Number of HSP's gapped (non-prelim): 10
length of query: 585
length of database: 18,247,518
effective HSP length: 108
effective length of query: 477
effective length of database: 14,157,990
effective search space: 6753361230
effective search space used: 6753361230
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 65 (29.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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