BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|116292178 hypothetical protein LOC414918 [Homo sapiens] (585 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|116292178 hypothetical protein LOC414918 [Homo sapiens] 1198 0.0 gi|32698777 hypothetical protein LOC201627 [Homo sapiens] 721 0.0 gi|29788755 SET binding factor 2 [Homo sapiens] 39 0.013 gi|57529131 AVL9 homolog (S. cerevisiase) [Homo sapiens] 37 0.039 gi|151301053 RNA binding motif protein 33 [Homo sapiens] 32 1.2 gi|239735519 SET binding factor 1 [Homo sapiens] 31 2.8 gi|51873064 mannosidase, alpha, class 2B, member 1 precursor [Ho... 31 3.6 gi|5031927 skeletal muscle receptor tyrosine kinase [Homo sapiens] 30 6.2 >gi|116292178 hypothetical protein LOC414918 [Homo sapiens] Length = 585 Score = 1198 bits (3099), Expect = 0.0 Identities = 585/585 (100%), Positives = 585/585 (100%) Query: 1 MDALLGTGPRRARGCLGAAGPTSSGRAARTPAAPWARFSAWLECVCVVTFDLELGQALQL 60 MDALLGTGPRRARGCLGAAGPTSSGRAARTPAAPWARFSAWLECVCVVTFDLELGQALQL Sbjct: 1 MDALLGTGPRRARGCLGAAGPTSSGRAARTPAAPWARFSAWLECVCVVTFDLELGQALQL 60 Query: 61 VYPNDFRLTDKEKSSICYLSFPDSHSGCLGDTQFSFRMRQCGGQRSPWHADDRHYNSRAP 120 VYPNDFRLTDKEKSSICYLSFPDSHSGCLGDTQFSFRMRQCGGQRSPWHADDRHYNSRAP Sbjct: 61 VYPNDFRLTDKEKSSICYLSFPDSHSGCLGDTQFSFRMRQCGGQRSPWHADDRHYNSRAP 120 Query: 121 VALQREPAHYFGYVYFRQVKDSSVKRGYFQKSLVLVSRLPFVRLFQALLSLIAPEYFDKL 180 VALQREPAHYFGYVYFRQVKDSSVKRGYFQKSLVLVSRLPFVRLFQALLSLIAPEYFDKL Sbjct: 121 VALQREPAHYFGYVYFRQVKDSSVKRGYFQKSLVLVSRLPFVRLFQALLSLIAPEYFDKL 180 Query: 181 APCLEAVCSEIDQWPAPAPGQTLNLPVMGVVVQVRIPSRVDKSESSPPKQFDQENLLPAP 240 APCLEAVCSEIDQWPAPAPGQTLNLPVMGVVVQVRIPSRVDKSESSPPKQFDQENLLPAP Sbjct: 181 APCLEAVCSEIDQWPAPAPGQTLNLPVMGVVVQVRIPSRVDKSESSPPKQFDQENLLPAP 240 Query: 241 VVLASVHELDLFRCFRPVLTHMQTLWELMLLGEPLLVLAPSPDVSSEMVLALTSCLQPLR 300 VVLASVHELDLFRCFRPVLTHMQTLWELMLLGEPLLVLAPSPDVSSEMVLALTSCLQPLR Sbjct: 241 VVLASVHELDLFRCFRPVLTHMQTLWELMLLGEPLLVLAPSPDVSSEMVLALTSCLQPLR 300 Query: 301 FCCDFRPYFTIHDSEFKEFTTRTQAPPNVVLGVTNPFFIKTLQHWPHILRVGEPKMSGDL 360 FCCDFRPYFTIHDSEFKEFTTRTQAPPNVVLGVTNPFFIKTLQHWPHILRVGEPKMSGDL Sbjct: 301 FCCDFRPYFTIHDSEFKEFTTRTQAPPNVVLGVTNPFFIKTLQHWPHILRVGEPKMSGDL 360 Query: 361 PKQVKLKKPSRLKTLDTKPGLYTAYTAHLHRDKALLKRLLKGVQKKRPSDVQSALLRRHL 420 PKQVKLKKPSRLKTLDTKPGLYTAYTAHLHRDKALLKRLLKGVQKKRPSDVQSALLRRHL Sbjct: 361 PKQVKLKKPSRLKTLDTKPGLYTAYTAHLHRDKALLKRLLKGVQKKRPSDVQSALLRRHL 420 Query: 421 LELTQSFIIPLEHYMASLMPLQKSITPWKTPPQIQPFSQDDFLRSLEHAGPQLTCILKGD 480 LELTQSFIIPLEHYMASLMPLQKSITPWKTPPQIQPFSQDDFLRSLEHAGPQLTCILKGD Sbjct: 421 LELTQSFIIPLEHYMASLMPLQKSITPWKTPPQIQPFSQDDFLRSLEHAGPQLTCILKGD 480 Query: 481 WLGLYRRFFKSPHFDGWYRQRHKEMALKLEALHLEAICEANIETWMKDKSEVEVVDLVLK 540 WLGLYRRFFKSPHFDGWYRQRHKEMALKLEALHLEAICEANIETWMKDKSEVEVVDLVLK Sbjct: 481 WLGLYRRFFKSPHFDGWYRQRHKEMALKLEALHLEAICEANIETWMKDKSEVEVVDLVLK 540 Query: 541 LREKLVRAQGHQLPVKEATLQRAQLYIETVIGSLPKDLQAVLCPP 585 LREKLVRAQGHQLPVKEATLQRAQLYIETVIGSLPKDLQAVLCPP Sbjct: 541 LREKLVRAQGHQLPVKEATLQRAQLYIETVIGSLPKDLQAVLCPP 585 >gi|32698777 hypothetical protein LOC201627 [Homo sapiens] Length = 608 Score = 721 bits (1862), Expect = 0.0 Identities = 332/548 (60%), Positives = 440/548 (80%) Query: 35 WARFSAWLECVCVVTFDLELGQALQLVYPNDFRLTDKEKSSICYLSFPDSHSGCLGDTQF 94 W FSAWL CVCVV FDLELGQA++++YP +LTD+EK++ICYLSFPDS+SGCLGDTQF Sbjct: 55 WDSFSAWLHCVCVVGFDLELGQAVEVIYPQHSKLTDREKTNICYLSFPDSNSGCLGDTQF 114 Query: 95 SFRMRQCGGQRSPWHADDRHYNSRAPVALQREPAHYFGYVYFRQVKDSSVKRGYFQKSLV 154 FR RQ G+R H ++ PV L+++PA+++GYVYFRQV+D ++KRGYFQKSLV Sbjct: 115 CFRFRQSSGRRVSLHCLLDQFDKDLPVYLKKDPAYFYGYVYFRQVRDKTLKRGYFQKSLV 174 Query: 155 LVSRLPFVRLFQALLSLIAPEYFDKLAPCLEAVCSEIDQWPAPAPGQTLNLPVMGVVVQV 214 L+S+LP++ F +L IAPEYF+K P LEA C+++D+WPAP PG+TL+LP+MGVV++V Sbjct: 175 LISKLPYIHFFHTVLKQIAPEYFEKNEPYLEAACNDVDRWPAPVPGKTLHLPIMGVVMKV 234 Query: 215 RIPSRVDKSESSPPKQFDQENLLPAPVVLASVHELDLFRCFRPVLTHMQTLWELMLLGEP 274 RIP+ DK ++ Q Q+ V+L +VHE+D+FRCF PV H Q LWEL+LLGEP Sbjct: 235 RIPTCHDKPGTTQIVQLTQQVDTNISVILPTVHEVDIFRCFCPVFLHSQMLWELVLLGEP 294 Query: 275 LLVLAPSPDVSSEMVLALTSCLQPLRFCCDFRPYFTIHDSEFKEFTTRTQAPPNVVLGVT 334 L+V+APSP SSE VLAL +C+ PL++ DFRPYFTIHDSEFKE+TTRTQAPP+V+LGVT Sbjct: 295 LVVMAPSPSESSETVLALVNCISPLKYFSDFRPYFTIHDSEFKEYTTRTQAPPSVILGVT 354 Query: 335 NPFFIKTLQHWPHILRVGEPKMSGDLPKQVKLKKPSRLKTLDTKPGLYTAYTAHLHRDKA 394 NPFF KTLQHWPHI+R+G+ K +G++PKQVK+KK LKTLD+KPG+YT+Y +L+RD+ Sbjct: 355 NPFFAKTLQHWPHIIRIGDLKPTGEIPKQVKVKKLKNLKTLDSKPGVYTSYKPYLNRDEE 414 Query: 395 LLKRLLKGVQKKRPSDVQSALLRRHLLELTQSFIIPLEHYMASLMPLQKSITPWKTPPQI 454 ++K+L KGVQ+KRPS+ QS +LRR+ LELTQSFIIPLE Y+ASLMPLQKSI+PWK+PPQ+ Sbjct: 415 IIKQLQKGVQQKRPSEAQSVILRRYFLELTQSFIIPLERYVASLMPLQKSISPWKSPPQL 474 Query: 455 QPFSQDDFLRSLEHAGPQLTCILKGDWLGLYRRFFKSPHFDGWYRQRHKEMALKLEALHL 514 + F ++F+++LE GPQLT +KGDW+GLYR F KSP+FDGW++ R KEM KLEALHL Sbjct: 475 RQFLPEEFMKTLEKTGPQLTSRIKGDWIGLYRHFLKSPNFDGWFKTRRKEMTQKLEALHL 534 Query: 515 EAICEANIETWMKDKSEVEVVDLVLKLREKLVRAQGHQLPVKEATLQRAQLYIETVIGSL 574 EA+CE ++ W++ +EVE VDLVLKL+ KL++A LPVK T+++ + +I+ +I +L Sbjct: 535 EALCEEDLLLWIQKHTEVETVDLVLKLKNKLLQADREHLPVKPDTMEKLRTHIDAIILAL 594 Query: 575 PKDLQAVL 582 P+DLQ +L Sbjct: 595 PEDLQGIL 602 >gi|29788755 SET binding factor 2 [Homo sapiens] Length = 1849 Score = 38.9 bits (89), Expect = 0.013 Identities = 24/59 (40%), Positives = 33/59 (55%) Query: 151 KSLVLVSRLPFVRLFQALLSLIAPEYFDKLAPCLEAVCSEIDQWPAPAPGQTLNLPVMG 209 KSLVLVSRL + +F+A L LI Y D L LE++ + + PA G + L +G Sbjct: 119 KSLVLVSRLYYPEIFRACLGLIYTVYVDSLNVSLESLIANLCACLVPAAGGSQKLFSLG 177 >gi|57529131 AVL9 homolog (S. cerevisiase) [Homo sapiens] Length = 648 Score = 37.4 bits (85), Expect = 0.039 Identities = 38/149 (25%), Positives = 60/149 (40%), Gaps = 37/149 (24%) Query: 45 VCVVTFDLELGQALQLVYP-------NDFRLTDKEKSSICYLSFPDSHSGCLGDTQFSFR 97 + VV F + G ++ YP +D +E + +L+ PD DT F Sbjct: 19 IVVVGFHHKKGCQVEFSYPPLIPGDGHDSHTLPEEWKYLPFLALPDGAHNYQEDTVF--- 75 Query: 98 MRQCGGQRSPWHADDRHYNSRAPVALQREPAHYFGYVYFRQVKDSSVK-------RGYFQ 150 +H R+ N A FG +RQ++ ++K R Q Sbjct: 76 ----------FHLPPRNGNG----------ATVFGISCYRQIEAKALKVRQADITRETVQ 115 Query: 151 KSLVLVSRLPFVRLFQALLSLIAPEYFDK 179 KS+ ++S+LP L QA L LI YF++ Sbjct: 116 KSVCVLSKLPLYGLLQAKLQLITHAYFEE 144 >gi|151301053 RNA binding motif protein 33 [Homo sapiens] Length = 1170 Score = 32.3 bits (72), Expect = 1.2 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 6/56 (10%) Query: 192 DQWPAPAPGQTLNLPVMGVVVQVRIPSRVDKSESSPPKQFDQENLLPAPVVLASVH 247 DQW AP P Q + +GV + R PS + + SPP P P +L S H Sbjct: 447 DQWRAPPPPQDRDPFFLGVSGEPRFPSHLFLEQRSPPPP------PPPPTLLNSSH 496 >gi|239735519 SET binding factor 1 [Homo sapiens] Length = 1893 Score = 31.2 bits (69), Expect = 2.8 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 4/87 (4%) Query: 151 KSLVLVSRLPFVRLFQALLSLIAPEYFDKLAPCLEAVCSEIDQWPAPAPGQTLNLPVMGV 210 K+LVLVSRL +F+ L LI + + L CLE V + P G + +G Sbjct: 131 KTLVLVSRLDHTEVFRNSLGLIYAIHVEGLNVCLENVIGNLLTCTVPLAGGSQRTISLGA 190 Query: 211 ----VVQVRIPSRVDKSESSPPKQFDQ 233 V+Q + + S S F Q Sbjct: 191 GDRQVIQTPLADSLPVSRCSVALLFRQ 217 >gi|51873064 mannosidase, alpha, class 2B, member 1 precursor [Homo sapiens] Length = 1011 Score = 30.8 bits (68), Expect = 3.6 Identities = 14/27 (51%), Positives = 16/27 (59%) Query: 12 ARGCLGAAGPTSSGRAARTPAAPWARF 38 ARGCL +AGP + RA R P P F Sbjct: 12 ARGCLDSAGPWTMSRALRPPLPPLCFF 38 >gi|5031927 skeletal muscle receptor tyrosine kinase [Homo sapiens] Length = 869 Score = 30.0 bits (66), Expect = 6.2 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Query: 352 GEPKMSGDLPKQVKLKK-PSRLKTLDTKPGLYTAYTAHLHRDK 393 G SG + + VK + SRL+ TKPGLYT + H +K Sbjct: 249 GNAVSSGSIQESVKDRVIDSRLQLFITKPGLYTCIATNKHGEK 291 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.323 0.138 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,983,948 Number of Sequences: 37866 Number of extensions: 1110599 Number of successful extensions: 2891 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 2882 Number of HSP's gapped (non-prelim): 10 length of query: 585 length of database: 18,247,518 effective HSP length: 108 effective length of query: 477 effective length of database: 14,157,990 effective search space: 6753361230 effective search space used: 6753361230 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.