Search of human proteins with 226503974

Search of human proteins with 226503974

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|226503974 PQ loop repeat containing 1 isoform 2 [Homo
sapiens]
         (132 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|226503974 PQ loop repeat containing 1 isoform 2 [Homo sapiens]     273   4e-74
gi|31542733 PQ loop repeat containing 1 isoform 1 [Homo sapiens]      229   5e-61
gi|226505140 PQ loop repeat containing 1 isoform 3 [Homo sapiens]     227   2e-60
gi|222831660 family with sequence similarity 171, member A2 [Hom...    26   8.0  
gi|216548223 synaptic vesicle glycoprotein 2 [Homo sapiens]            26   8.0  

>gi|226503974 PQ loop repeat containing 1 isoform 2 [Homo sapiens]
          Length = 132

 Score =  273 bits (697), Expect = 4e-74
 Identities = 132/132 (100%), Positives = 132/132 (100%)

Query: 1   MEAEGLDWLLVPLHQLVSWGAAAAMVFGGVVPYVPQYRDIRRTQNADGFSTYVCLVLLVA 60
           MEAEGLDWLLVPLHQLVSWGAAAAMVFGGVVPYVPQYRDIRRTQNADGFSTYVCLVLLVA
Sbjct: 1   MEAEGLDWLLVPLHQLVSWGAAAAMVFGGVVPYVPQYRDIRRTQNADGFSTYVCLVLLVA 60

Query: 61  NILRILFWFGRRFESPLLWQSAIMILTMLLMLKLCTEVRVANELNARRRSFTASRWCSCG 120
           NILRILFWFGRRFESPLLWQSAIMILTMLLMLKLCTEVRVANELNARRRSFTASRWCSCG
Sbjct: 61  NILRILFWFGRRFESPLLWQSAIMILTMLLMLKLCTEVRVANELNARRRSFTASRWCSCG 120

Query: 121 PVVTPSRRPTSC 132
           PVVTPSRRPTSC
Sbjct: 121 PVVTPSRRPTSC 132


>gi|31542733 PQ loop repeat containing 1 isoform 1 [Homo sapiens]
          Length = 271

 Score =  229 bits (584), Expect = 5e-61
 Identities = 113/114 (99%), Positives = 114/114 (100%)

Query: 1   MEAEGLDWLLVPLHQLVSWGAAAAMVFGGVVPYVPQYRDIRRTQNADGFSTYVCLVLLVA 60
           MEAEGLDWLLVPLHQLVSWGAAAAMVFGGVVPYVPQYRDIRRTQNADGFSTYVCLVLLVA
Sbjct: 1   MEAEGLDWLLVPLHQLVSWGAAAAMVFGGVVPYVPQYRDIRRTQNADGFSTYVCLVLLVA 60

Query: 61  NILRILFWFGRRFESPLLWQSAIMILTMLLMLKLCTEVRVANELNARRRSFTAS 114
           NILRILFWFGRRFESPLLWQSAIMILTMLLMLKLCTEVRVANELNARRRSFTA+
Sbjct: 61  NILRILFWFGRRFESPLLWQSAIMILTMLLMLKLCTEVRVANELNARRRSFTAA 114


>gi|226505140 PQ loop repeat containing 1 isoform 3 [Homo sapiens]
          Length = 253

 Score =  227 bits (579), Expect = 2e-60
 Identities = 112/112 (100%), Positives = 112/112 (100%)

Query: 1   MEAEGLDWLLVPLHQLVSWGAAAAMVFGGVVPYVPQYRDIRRTQNADGFSTYVCLVLLVA 60
           MEAEGLDWLLVPLHQLVSWGAAAAMVFGGVVPYVPQYRDIRRTQNADGFSTYVCLVLLVA
Sbjct: 1   MEAEGLDWLLVPLHQLVSWGAAAAMVFGGVVPYVPQYRDIRRTQNADGFSTYVCLVLLVA 60

Query: 61  NILRILFWFGRRFESPLLWQSAIMILTMLLMLKLCTEVRVANELNARRRSFT 112
           NILRILFWFGRRFESPLLWQSAIMILTMLLMLKLCTEVRVANELNARRRSFT
Sbjct: 61  NILRILFWFGRRFESPLLWQSAIMILTMLLMLKLCTEVRVANELNARRRSFT 112


>gi|222831660 family with sequence similarity 171, member A2 [Homo
           sapiens]
          Length = 826

 Score = 26.2 bits (56), Expect = 8.0
 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 2   EAEGLDWLLVPLHQLVSWGAAAAMVFGGVVPYVPQYRDIRRTQNADGFSTYVCLVLLVAN 61
           E   L W  V   QL  W AA A    G+V      +DI         +    L LLV  
Sbjct: 273 EGRQLYWTFVS-PQLGYWVAAMASPTAGLVTITSGIQDIGTYHTIFLLTILAALALLVLI 331

Query: 62  ILRILFWFGRR 72
           +L +L ++ RR
Sbjct: 332 LLCLLIYYCRR 342


>gi|216548223 synaptic vesicle glycoprotein 2 [Homo sapiens]
          Length = 742

 Score = 26.2 bits (56), Expect = 8.0
 Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 10/82 (12%)

Query: 22  AAAMVFGGV---------VPYVPQYRDIRRTQNADGFSTYVCLVLLVANILRILFWFGRR 72
           A   +FGGV         V  V  Y   +RT  A GF   +C +  V  I     + G  
Sbjct: 653 ALLCLFGGVSIASWNALDVLTVELYPSDKRT-TAFGFLNALCKLAAVLGISIFTSFVGIT 711

Query: 73  FESPLLWQSAIMILTMLLMLKL 94
             +P+L+ SA + L   L LKL
Sbjct: 712 KAAPILFASAALALGSSLALKL 733


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.329    0.139    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,702,448
Number of Sequences: 37866
Number of extensions: 160218
Number of successful extensions: 405
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 402
Number of HSP's gapped (non-prelim): 5
length of query: 132
length of database: 18,247,518
effective HSP length: 91
effective length of query: 41
effective length of database: 14,801,712
effective search space: 606870192
effective search space used: 606870192
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.