Search of human proteins with 223671906

Search of human proteins with 223671906

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|223671906 roadblock domain-containing protein 3 isoform 2
[Homo sapiens]
         (95 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|223671906 roadblock domain-containing protein 3 isoform 2 [Ho...   188   9e-49
gi|7661728 roadblock domain-containing protein 3 isoform 1 [Homo...   172   5e-44
gi|54792073 mucolipin 2 [Homo sapiens]                                 26   6.0  

>gi|223671906 roadblock domain-containing protein 3 isoform 2
          [Homo sapiens]
          Length = 95

 Score =  188 bits (477), Expect = 9e-49
 Identities = 95/95 (100%), Positives = 95/95 (100%)

Query: 1  MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNG 60
          MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNG
Sbjct: 1  MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNG 60

Query: 61 NQAFNEDNLKFILMDCMAQALVQYLEEPLTQVAAS 95
          NQAFNEDNLKFILMDCMAQALVQYLEEPLTQVAAS
Sbjct: 61 NQAFNEDNLKFILMDCMAQALVQYLEEPLTQVAAS 95


>gi|7661728 roadblock domain-containing protein 3 isoform 1 [Homo
           sapiens]
          Length = 125

 Score =  172 bits (436), Expect = 5e-44
 Identities = 95/125 (76%), Positives = 95/125 (76%), Gaps = 30/125 (24%)

Query: 1   MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNG 60
           MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNG
Sbjct: 1   MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNG 60

Query: 61  NQAFNEDNLKFILMDCM------------------------------AQALVQYLEEPLT 90
           NQAFNEDNLKFILMDCM                              AQALVQYLEEPLT
Sbjct: 61  NQAFNEDNLKFILMDCMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLT 120

Query: 91  QVAAS 95
           QVAAS
Sbjct: 121 QVAAS 125


>gi|54792073 mucolipin 2 [Homo sapiens]
          Length = 566

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 20  QSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDNLKFILMDCMAQ 79
           Q+T++ +N+        Y D+DA++      NI+ +  +N       D   F+++ C+A 
Sbjct: 247 QNTIIFDNKAHSGKIKIYFDSDAKIEECKDLNIFGSTQKNAQYVLVFD--AFVIVICLAS 304

Query: 80  ALV 82
            ++
Sbjct: 305 LIL 307


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.128    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,042,685
Number of Sequences: 37866
Number of extensions: 97082
Number of successful extensions: 143
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 140
Number of HSP's gapped (non-prelim): 4
length of query: 95
length of database: 18,247,518
effective HSP length: 66
effective length of query: 29
effective length of database: 15,748,362
effective search space: 456702498
effective search space used: 456702498
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.