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Search of human proteins with 222352102
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|222352102 sorting nexin 20 isoform 3 [Homo sapiens]
(102 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|222352102 sorting nexin 20 isoform 3 [Homo sapiens] 220 2e-58
gi|23503255 sorting nexin 20 isoform 2 [Homo sapiens] 203 3e-53
gi|33504571 sorting nexin 20 isoform 1 [Homo sapiens] 203 3e-53
gi|111118961 sorting nexin 21 isoform d [Homo sapiens] 33 0.037
gi|15553099 sorting nexin 21 isoform a [Homo sapiens] 33 0.037
gi|23510350 sorting nexin 21 isoform b [Homo sapiens] 33 0.037
gi|19924099 synapsin I isoform Ia [Homo sapiens] 33 0.063
gi|19924097 synapsin I isoform Ib [Homo sapiens] 33 0.063
gi|154759259 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ... 30 0.31
gi|194595509 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ... 30 0.31
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 30 0.31
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 30 0.31
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 30 0.31
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 30 0.31
gi|151301137 AT-hook transcription factor [Homo sapiens] 30 0.31
gi|71274178 developing brain homeobox 1 [Homo sapiens] 30 0.31
gi|71043876 undifferentiated embryonic cell transcription factor... 30 0.41
gi|84105335 mesenchyme homeobox 2 [Homo sapiens] 30 0.53
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 30 0.53
gi|111118959 sorting nexin 21 isoform c [Homo sapiens] 30 0.53
gi|239757960 PREDICTED: hypothetical protein [Homo sapiens] 29 0.70
gi|239753324 PREDICTED: hypothetical protein [Homo sapiens] 29 0.70
gi|169218002 PREDICTED: hypothetical protein [Homo sapiens] 29 0.70
gi|169163057 PREDICTED: hypothetical protein [Homo sapiens] 29 0.70
gi|27735129 hypothetical protein LOC148345 [Homo sapiens] 28 1.2
gi|110815800 WD repeat domain 32 [Homo sapiens] 28 1.6
gi|239751080 PREDICTED: hypothetical protein XP_002347700 [Homo ... 28 1.6
gi|239745567 PREDICTED: hypothetical protein XP_002344149 [Homo ... 28 1.6
gi|28872803 myeloid translocation gene on chromosome 16 isoform ... 28 1.6
gi|28872805 myeloid translocation gene on chromosome 16 isoform ... 28 1.6
>gi|222352102 sorting nexin 20 isoform 3 [Homo sapiens]
Length = 102
Score = 220 bits (560), Expect = 2e-58
Identities = 102/102 (100%), Positives = 102/102 (100%)
Query: 1 MASPEHPGSPGCMGPITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTREL 60
MASPEHPGSPGCMGPITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTREL
Sbjct: 1 MASPEHPGSPGCMGPITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTREL 60
Query: 61 QQYWQNQKCRWKHVKLLFEIASARIEERKVSKFVAPAPDATP 102
QQYWQNQKCRWKHVKLLFEIASARIEERKVSKFVAPAPDATP
Sbjct: 61 QQYWQNQKCRWKHVKLLFEIASARIEERKVSKFVAPAPDATP 102
>gi|23503255 sorting nexin 20 isoform 2 [Homo sapiens]
Length = 129
Score = 203 bits (516), Expect = 3e-53
Identities = 94/94 (100%), Positives = 94/94 (100%)
Query: 1 MASPEHPGSPGCMGPITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTREL 60
MASPEHPGSPGCMGPITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTREL
Sbjct: 1 MASPEHPGSPGCMGPITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTREL 60
Query: 61 QQYWQNQKCRWKHVKLLFEIASARIEERKVSKFV 94
QQYWQNQKCRWKHVKLLFEIASARIEERKVSKFV
Sbjct: 61 QQYWQNQKCRWKHVKLLFEIASARIEERKVSKFV 94
>gi|33504571 sorting nexin 20 isoform 1 [Homo sapiens]
Length = 316
Score = 203 bits (516), Expect = 3e-53
Identities = 94/94 (100%), Positives = 94/94 (100%)
Query: 1 MASPEHPGSPGCMGPITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTREL 60
MASPEHPGSPGCMGPITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTREL
Sbjct: 1 MASPEHPGSPGCMGPITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTREL 60
Query: 61 QQYWQNQKCRWKHVKLLFEIASARIEERKVSKFV 94
QQYWQNQKCRWKHVKLLFEIASARIEERKVSKFV
Sbjct: 61 QQYWQNQKCRWKHVKLLFEIASARIEERKVSKFV 94
>gi|111118961 sorting nexin 21 isoform d [Homo sapiens]
Length = 158
Score = 33.5 bits (75), Expect = 0.037
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 37 PGPDGHLDTHSGLSSNSSMTTRELQQYWQNQKCRWKHVKLLFEIASARIEERKVSKFV 94
P PDG S + R+LQ +W+ + +LLFE+ SA + + SK+V
Sbjct: 100 PPPDGQW--------GSQLLARQLQDFWKKSRNTLAPQRLLFEVTSANVVKDPPSKYV 149
>gi|15553099 sorting nexin 21 isoform a [Homo sapiens]
Length = 373
Score = 33.5 bits (75), Expect = 0.037
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 37 PGPDGHLDTHSGLSSNSSMTTRELQQYWQNQKCRWKHVKLLFEIASARIEERKVSKFV 94
P PDG S + R+LQ +W+ + +LLFE+ SA + + SK+V
Sbjct: 100 PPPDGQW--------GSQLLARQLQDFWKKSRNTLAPQRLLFEVTSANVVKDPPSKYV 149
>gi|23510350 sorting nexin 21 isoform b [Homo sapiens]
Length = 199
Score = 33.5 bits (75), Expect = 0.037
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 37 PGPDGHLDTHSGLSSNSSMTTRELQQYWQNQKCRWKHVKLLFEIASARIEERKVSKFV 94
P PDG S + R+LQ +W+ + +LLFE+ SA + + SK+V
Sbjct: 100 PPPDGQW--------GSQLLARQLQDFWKKSRNTLAPQRLLFEVTSANVVKDPPSKYV 149
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 32.7 bits (73), Expect = 0.063
Identities = 23/57 (40%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 4 PEHPG--SPGCM-GPITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTT 57
P PG SPG GP T R+ APA P P PG G S LS+ TT
Sbjct: 32 PPPPGAHSPGATPGPGTATAERSSGVAPAASPAAPSPGSSGGGGFFSSLSNAVKQTT 88
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 32.7 bits (73), Expect = 0.063
Identities = 23/57 (40%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 4 PEHPG--SPGCM-GPITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTT 57
P PG SPG GP T R+ APA P P PG G S LS+ TT
Sbjct: 32 PPPPGAHSPGATPGPGTATAERSSGVAPAASPAAPSPGSSGGGGFFSSLSNAVKQTT 88
>gi|154759259 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)
isoform 2 [Homo sapiens]
Length = 2472
Score = 30.4 bits (67), Expect = 0.31
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 37 PGPDGHLDTHSGLSSNSSMTTRELQQYWQNQKCRWKHVKLLFEIASARIEER-KVSKFVA 95
P G LDT LS ++++ E+QQ WK +K L R+EE + +FVA
Sbjct: 1818 PAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVEHWKELKQLAAARGQRLEESLEYQQFVA 1877
>gi|194595509 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)
isoform 1 [Homo sapiens]
Length = 2477
Score = 30.4 bits (67), Expect = 0.31
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 37 PGPDGHLDTHSGLSSNSSMTTRELQQYWQNQKCRWKHVKLLFEIASARIEER-KVSKFVA 95
P G LDT LS ++++ E+QQ WK +K L R+EE + +FVA
Sbjct: 1823 PAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVEHWKELKQLAAARGQRLEESLEYQQFVA 1882
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 30.4 bits (67), Expect = 0.31
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 4 PEHPGSPGCMGPITQCTARTQQEAPATGPDLP-HPGPDG 41
P PG PG GP + + T P P P HPGP G
Sbjct: 633 PGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQG 671
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 30.4 bits (67), Expect = 0.31
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 4 PEHPGSPGCMGPITQCTARTQQEAPATGPDLP-HPGPDG 41
P PG PG GP + + T P P P HPGP G
Sbjct: 633 PGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQG 671
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 30.4 bits (67), Expect = 0.31
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 4 PEHPGSPGCMGPITQCTARTQQEAPATGPDLP-HPGPDG 41
P PG PG GP + + T P P P HPGP G
Sbjct: 633 PGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQG 671
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 30.4 bits (67), Expect = 0.31
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 4 PEHPGSPGCMGPITQCTARTQQEAPATGPDLP-HPGPDG 41
P PG PG GP + + T P P P HPGP G
Sbjct: 633 PGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQG 671
>gi|151301137 AT-hook transcription factor [Homo sapiens]
Length = 1439
Score = 30.4 bits (67), Expect = 0.31
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 24 QQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTREL 60
QQ P D PHP PDGH D+ SG +S ++
Sbjct: 63 QQHLPPLEWD-PHPQPDGHQDSESGETSGEEAEAEDV 98
>gi|71274178 developing brain homeobox 1 [Homo sapiens]
Length = 382
Score = 30.4 bits (67), Expect = 0.31
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 17 TQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTRELQQYWQNQKCRWKHVKL 76
+Q TAR + AP + P P P G D S S T +++ ++QN++ +W++ K
Sbjct: 223 SQDTARRTEPAPDSTPR-PRASP-GAPDLTSASPFFSPAGTFQVKIWFQNRRMKWRNSKE 280
Query: 77 LFEIASARIEERKVSKFVAPAPD 99
++S E+ + + P PD
Sbjct: 281 RELLSSGGCREQTLPTKLNPHPD 303
>gi|71043876 undifferentiated embryonic cell transcription factor 1
[Homo sapiens]
Length = 341
Score = 30.0 bits (66), Expect = 0.41
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 2 ASPEHPGSPGCMGPITQCTARTQQEAPATGPDLPHPGP 39
ASP PGSP P T + AP GP P P P
Sbjct: 214 ASPA-PGSPPAPAPTALATCIPEDRAPVRGPGSPPPPP 250
>gi|84105335 mesenchyme homeobox 2 [Homo sapiens]
Length = 304
Score = 29.6 bits (65), Expect = 0.53
Identities = 13/39 (33%), Positives = 27/39 (69%)
Query: 49 LSSNSSMTTRELQQYWQNQKCRWKHVKLLFEIASARIEE 87
++ N +T R+++ ++QN++ +WK VK + A+AR +E
Sbjct: 220 IAVNLDLTERQVKVWFQNRRMKWKRVKGGQQGAAAREKE 258
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 29.6 bits (65), Expect = 0.53
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 7 PGSPGCMGPITQCTARTQQEAPATGPDLPHPGPDG 41
P +P P + T R + +P GP P+PGPDG
Sbjct: 336 PATPELAEPESAPTLRVEPPSPPEGP--PNPGPDG 368
>gi|111118959 sorting nexin 21 isoform c [Homo sapiens]
Length = 152
Score = 29.6 bits (65), Expect = 0.53
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Query: 37 PGPDGHLDTHSGLSSNSSMTTRELQQYWQNQKCRWKHVKLLFEIASARI 85
P PDG S + R+LQ +W+ + +LLFE+ SA +
Sbjct: 100 PPPDGQW--------GSQLLARQLQDFWKKSRNTLAPQRLLFEVTSANV 140
>gi|239757960 PREDICTED: hypothetical protein [Homo sapiens]
Length = 292
Score = 29.3 bits (64), Expect = 0.70
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 4 PEH---PGSPGCMGPITQCTARTQQEAPATGPDLPHPGP 39
P+H PG P C P+ ++ PA P + PGP
Sbjct: 42 PDHAPPPGRPSCSRPLCAGSSCLATPEPARAPSIAEPGP 80
>gi|239753324 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 29.3 bits (64), Expect = 0.70
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 4 PEH---PGSPGCMGPITQCTARTQQEAPATGPDLPHPGP 39
P+H PG P C P+ ++ PA P + PGP
Sbjct: 62 PDHAPPPGRPSCSRPLCAGSSCLATPEPARSPSIAEPGP 100
>gi|169218002 PREDICTED: hypothetical protein [Homo sapiens]
Length = 218
Score = 29.3 bits (64), Expect = 0.70
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 4 PEH---PGSPGCMGPITQCTARTQQEAPATGPDLPHPGP 39
P+H PG P C P+ ++ PA P + PGP
Sbjct: 35 PDHAPPPGRPSCSRPLCAGSSCLATPEPARAPSIAEPGP 73
>gi|169163057 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 29.3 bits (64), Expect = 0.70
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 4 PEH---PGSPGCMGPITQCTARTQQEAPATGPDLPHPGP 39
P+H PG P C P+ ++ PA P + PGP
Sbjct: 62 PDHAPPPGRPSCSRPLCAGSSCLATPEPARAPSIAEPGP 100
>gi|27735129 hypothetical protein LOC148345 [Homo sapiens]
Length = 656
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 9 SPGCMGPITQCTARTQQEAPATGPDLPHPGPDGHLDTHS 47
SPG P C+ + TGP LP G GH+D S
Sbjct: 442 SPG--EPQETCSGTEVERPRQTGPGLPREGARGHMDLSS 478
>gi|110815800 WD repeat domain 32 [Homo sapiens]
Length = 559
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 4 PEHPGSPGCMGPITQCTARTQQEAPATGPDLP-HPGPD 40
P PG G G + + +A ATGP P HPG D
Sbjct: 6 PHSPGGDGSAGAGAEEPTPHEGQAAATGPPSPLHPGAD 43
>gi|239751080 PREDICTED: hypothetical protein XP_002347700 [Homo
sapiens]
Length = 330
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 7 PGSPGCMG--PITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTRELQQYW 64
PGS G P+T C+ Q P G P PGP + + + L + R L++
Sbjct: 253 PGSAPAAGAAPLTLCSPPPPQPRPVRGQPRPLPGPVNNPGSVNRLRQHQ---PRPLRRPP 309
Query: 65 QNQKCRWK 72
Q RW+
Sbjct: 310 PGQAARWE 317
>gi|239745567 PREDICTED: hypothetical protein XP_002344149 [Homo
sapiens]
Length = 330
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 7 PGSPGCMG--PITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTRELQQYW 64
PGS G P+T C+ Q P G P PGP + + + L + R L++
Sbjct: 253 PGSAPAAGAAPLTLCSPPPPQPRPVRGQPRPLPGPVNNPGSVNRLRQHQ---PRPLRRPP 309
Query: 65 QNQKCRWK 72
Q RW+
Sbjct: 310 PGQAARWE 317
>gi|28872803 myeloid translocation gene on chromosome 16 isoform
MTG16a [Homo sapiens]
Length = 653
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 4 PEHPGSPGCMGPITQCTARTQQEAPATGPDLP-HPGPDGHLDT 45
P P + +GP A + EA + GP P P P G LDT
Sbjct: 608 PGPPEAAHSLGPSLPVGAASPSEAGSAGPSRPGSPSPPGPLDT 650
>gi|28872805 myeloid translocation gene on chromosome 16 isoform
MTG16b [Homo sapiens]
Length = 567
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 4 PEHPGSPGCMGPITQCTARTQQEAPATGPDLP-HPGPDGHLDT 45
P P + +GP A + EA + GP P P P G LDT
Sbjct: 522 PGPPEAAHSLGPSLPVGAASPSEAGSAGPSRPGSPSPPGPLDT 564
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.128 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,378,639
Number of Sequences: 37866
Number of extensions: 275815
Number of successful extensions: 1112
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1021
Number of HSP's gapped (non-prelim): 140
length of query: 102
length of database: 18,247,518
effective HSP length: 73
effective length of query: 29
effective length of database: 15,483,300
effective search space: 449015700
effective search space used: 449015700
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.