Search of human proteins with 22091452

Search of human proteins with 22091452

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|22091452 apolipoprotein M [Homo sapiens]
         (188 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|22091452 apolipoprotein M [Homo sapiens]                           395   e-111
gi|14251209 chloride intracellular channel 1 [Homo sapiens]            28   4.7  

>gi|22091452 apolipoprotein M [Homo sapiens]
          Length = 188

 Score =  395 bits (1016), Expect = e-111
 Identities = 188/188 (100%), Positives = 188/188 (100%)

Query: 1   MFHQIWAALLYFYGIILNSIYQCPEHSQLTTLGVDGKEFPEVHLGQWYFIAGAAPTKEEL 60
           MFHQIWAALLYFYGIILNSIYQCPEHSQLTTLGVDGKEFPEVHLGQWYFIAGAAPTKEEL
Sbjct: 1   MFHQIWAALLYFYGIILNSIYQCPEHSQLTTLGVDGKEFPEVHLGQWYFIAGAAPTKEEL 60

Query: 61  ATFDPVDNIVFNMAAGSAPMQLHLRATIRMKDGLCVPRKWIYHLTEGSTDLRTEGRPDMK 120
           ATFDPVDNIVFNMAAGSAPMQLHLRATIRMKDGLCVPRKWIYHLTEGSTDLRTEGRPDMK
Sbjct: 61  ATFDPVDNIVFNMAAGSAPMQLHLRATIRMKDGLCVPRKWIYHLTEGSTDLRTEGRPDMK 120

Query: 121 TELFSSSCPGGIMLNETGQGYQRFLLYNRSPHPPEKCVEEFKSLTSCLDSKAFLLTPRNQ 180
           TELFSSSCPGGIMLNETGQGYQRFLLYNRSPHPPEKCVEEFKSLTSCLDSKAFLLTPRNQ
Sbjct: 121 TELFSSSCPGGIMLNETGQGYQRFLLYNRSPHPPEKCVEEFKSLTSCLDSKAFLLTPRNQ 180

Query: 181 EACELSNN 188
           EACELSNN
Sbjct: 181 EACELSNN 188


>gi|14251209 chloride intracellular channel 1 [Homo sapiens]
          Length = 241

 Score = 28.1 bits (61), Expect = 4.7
 Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 13/68 (19%)

Query: 100 WIYHLTEGSTDLRTEGRPDMKTELFSSSCPGGIMLNETGQGYQRFLLYNRSPHPPEKCVE 159
           W+  +T   T + T+ R    TE     CPGG +          FLLY    H     +E
Sbjct: 35  WLKGVTFNVTTVDTKRR----TETVQKLCPGGQL---------PFLLYGTEVHTDTNKIE 81

Query: 160 EFKSLTSC 167
           EF     C
Sbjct: 82  EFLEAVLC 89


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.137    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,116,199
Number of Sequences: 37866
Number of extensions: 372112
Number of successful extensions: 681
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 680
Number of HSP's gapped (non-prelim): 2
length of query: 188
length of database: 18,247,518
effective HSP length: 96
effective length of query: 92
effective length of database: 14,612,382
effective search space: 1344339144
effective search space used: 1344339144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.