Search of human proteins with 21362088

Search of human proteins with 21362088

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|21362088 GINS complex subunit 3 isoform b [Homo sapiens]
         (216 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|21362088 GINS complex subunit 3 isoform b [Homo sapiens]           437   e-123
gi|187169264 GINS complex subunit 3 isoform a [Homo sapiens]          417   e-117
gi|187169266 GINS complex subunit 3 isoform c [Homo sapiens]          160   1e-39
gi|24415404 MDN1, midasin homolog [Homo sapiens]                       32   0.54 
gi|51477716 mannosidase, alpha, class 2A, member 2 [Homo sapiens]      29   3.5  
gi|153792694 baculoviral IAP repeat-containing 6 [Homo sapiens]        28   4.5  
gi|115511030 hypothetical protein LOC115004 [Homo sapiens]             28   7.8  

>gi|21362088 GINS complex subunit 3 isoform b [Homo sapiens]
          Length = 216

 Score =  437 bits (1123), Expect = e-123
 Identities = 216/216 (100%), Positives = 216/216 (100%)

Query: 1   MSEAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAV 60
           MSEAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAV
Sbjct: 1   MSEAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAV 60

Query: 61  PQGSKLELPLWLAKGLFDNKRRILSVELPKIYQEGWRTVFSADPNVVDLHKMGPHFYGFG 120
           PQGSKLELPLWLAKGLFDNKRRILSVELPKIYQEGWRTVFSADPNVVDLHKMGPHFYGFG
Sbjct: 61  PQGSKLELPLWLAKGLFDNKRRILSVELPKIYQEGWRTVFSADPNVVDLHKMGPHFYGFG 120

Query: 121 SQLLHFDSPENADISQSLLQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQ 180
           SQLLHFDSPENADISQSLLQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQ
Sbjct: 121 SQLLHFDSPENADISQSLLQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQ 180

Query: 181 KGLNDFQCWEKGQASQITASNLVQNYKKRKFTDMED 216
           KGLNDFQCWEKGQASQITASNLVQNYKKRKFTDMED
Sbjct: 181 KGLNDFQCWEKGQASQITASNLVQNYKKRKFTDMED 216


>gi|187169264 GINS complex subunit 3 isoform a [Homo sapiens]
          Length = 255

 Score =  417 bits (1073), Expect = e-117
 Identities = 216/255 (84%), Positives = 216/255 (84%), Gaps = 39/255 (15%)

Query: 1   MSEAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAV 60
           MSEAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAV
Sbjct: 1   MSEAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAV 60

Query: 61  P---------------------------------------QGSKLELPLWLAKGLFDNKR 81
           P                                       QGSKLELPLWLAKGLFDNKR
Sbjct: 61  PQGFALLPRLECSGVIWLTAALTSQAPEILPPQPPMWLVLQGSKLELPLWLAKGLFDNKR 120

Query: 82  RILSVELPKIYQEGWRTVFSADPNVVDLHKMGPHFYGFGSQLLHFDSPENADISQSLLQT 141
           RILSVELPKIYQEGWRTVFSADPNVVDLHKMGPHFYGFGSQLLHFDSPENADISQSLLQT
Sbjct: 121 RILSVELPKIYQEGWRTVFSADPNVVDLHKMGPHFYGFGSQLLHFDSPENADISQSLLQT 180

Query: 142 FIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWEKGQASQITASN 201
           FIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWEKGQASQITASN
Sbjct: 181 FIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWEKGQASQITASN 240

Query: 202 LVQNYKKRKFTDMED 216
           LVQNYKKRKFTDMED
Sbjct: 241 LVQNYKKRKFTDMED 255


>gi|187169266 GINS complex subunit 3 isoform c [Homo sapiens]
          Length = 138

 Score =  160 bits (404), Expect = 1e-39
 Identities = 78/85 (91%), Positives = 81/85 (95%)

Query: 132 ADISQSLLQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWEK 191
           A+   ++ QTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWEK
Sbjct: 54  AETDNAVPQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWEK 113

Query: 192 GQASQITASNLVQNYKKRKFTDMED 216
           GQASQITASNLVQNYKKRKFTDMED
Sbjct: 114 GQASQITASNLVQNYKKRKFTDMED 138



 Score =  125 bits (313), Expect = 4e-29
 Identities = 62/62 (100%), Positives = 62/62 (100%)

Query: 1  MSEAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAV 60
          MSEAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAV
Sbjct: 1  MSEAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAV 60

Query: 61 PQ 62
          PQ
Sbjct: 61 PQ 62


>gi|24415404 MDN1, midasin homolog [Homo sapiens]
          Length = 5596

 Score = 31.6 bits (70), Expect = 0.54
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 122  QLLHFDSPENADISQSLL------QTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGL 175
            Q LH D P +A ++QSLL      Q    +FR+ +      Y +  S L A + +++ G+
Sbjct: 3352 QALHIDGPRSAQVAQSLLKEEASWQQSHHQFRKRLSEEYTFYPDAVSPLQASILQLQHGM 3411


>gi|51477716 mannosidase, alpha, class 2A, member 2 [Homo sapiens]
          Length = 1150

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 15  PEENFLSLDDILMSHEKLPVRT 36
           PE  FL +DD  +SH+ LP RT
Sbjct: 618 PEAPFLQVDDTRLSHDALPERT 639


>gi|153792694 baculoviral IAP repeat-containing 6 [Homo sapiens]
          Length = 4857

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 2/92 (2%)

Query: 93   QEGWRTVFSADPNVVDLHKMGPHFYGFGSQLLHFDSPENADISQSLLQTFIGRFRRIMDS 152
            QE    +  +DPN++  H +     G      +  SP+    +   +Q F+ R +  + S
Sbjct: 2745 QESTAHLLVSDPNLI--HVLVKFLSGTSPHGTNQHSPQVGPTATQAMQEFLTRLQVHLSS 2802

Query: 153  SQNAYNEDTSALVARLDEMERGLFQTGQKGLN 184
            +      +    +  +   ERG FQTGQ  L+
Sbjct: 2803 TCPQIFSEFLLKLIHILSTERGAFQTGQGPLD 2834


>gi|115511030 hypothetical protein LOC115004 [Homo sapiens]
          Length = 522

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 9  ESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAVP 61
          E+GA  P+ +  +     M   + P   E A+P+ G F   R +G+    + P
Sbjct: 14 EAGATAPKASARNARGAPMDPTESPAAPEAALPKAGKFGPARKSGSRQKKSAP 66


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,536,697
Number of Sequences: 37866
Number of extensions: 308206
Number of successful extensions: 655
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 648
Number of HSP's gapped (non-prelim): 9
length of query: 216
length of database: 18,247,518
effective HSP length: 98
effective length of query: 118
effective length of database: 14,536,650
effective search space: 1715324700
effective search space used: 1715324700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.