Search of human proteins with 19923909

Search of human proteins with 19923909

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|19923909 transmembrane protein 129 isoform b [Homo sapiens]
         (232 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|19923909 transmembrane protein 129 isoform b [Homo sapiens]        474   e-134
gi|187936961 transmembrane protein 129 isoform a [Homo sapiens]       462   e-131
gi|4758010 clock [Homo sapiens]                                        29   3.9  
gi|105990535 coagulation factor V precursor [Homo sapiens]             28   5.1  
gi|90669191 solute carrier family 22 member 7 isoform b [Homo sa...    28   6.7  
gi|24497497 solute carrier family 22 member 7 isoform a [Homo sa...    28   6.7  

>gi|19923909 transmembrane protein 129 isoform b [Homo sapiens]
          Length = 232

 Score =  474 bits (1221), Expect = e-134
 Identities = 232/232 (100%), Positives = 232/232 (100%)

Query: 1   MDSPEVTFTLAYLVFAVCFVFTPNEFHAAGLTVQNLLSGWLGSEDAAFVPFHLRRTAATL 60
           MDSPEVTFTLAYLVFAVCFVFTPNEFHAAGLTVQNLLSGWLGSEDAAFVPFHLRRTAATL
Sbjct: 1   MDSPEVTFTLAYLVFAVCFVFTPNEFHAAGLTVQNLLSGWLGSEDAAFVPFHLRRTAATL 60

Query: 61  LCHSLLPLGYYVGMCLAASEKRLHALSQAPEAWRLFLLLAVTLPSIACILIYYWSRDRWA 120
           LCHSLLPLGYYVGMCLAASEKRLHALSQAPEAWRLFLLLAVTLPSIACILIYYWSRDRWA
Sbjct: 61  LCHSLLPLGYYVGMCLAASEKRLHALSQAPEAWRLFLLLAVTLPSIACILIYYWSRDRWA 120

Query: 121 CHPLARTLALYALPQSGWQAVASSVNTEFRRIDKFATGAPGARVIVTDTWVMKVTTYRVH 180
           CHPLARTLALYALPQSGWQAVASSVNTEFRRIDKFATGAPGARVIVTDTWVMKVTTYRVH
Sbjct: 121 CHPLARTLALYALPQSGWQAVASSVNTEFRRIDKFATGAPGARVIVTDTWVMKVTTYRVH 180

Query: 181 VAQQQDVHLTVTESRQHELSPDSNLPVQLLTIRVASTNPAVQAFDIWSWRPA 232
           VAQQQDVHLTVTESRQHELSPDSNLPVQLLTIRVASTNPAVQAFDIWSWRPA
Sbjct: 181 VAQQQDVHLTVTESRQHELSPDSNLPVQLLTIRVASTNPAVQAFDIWSWRPA 232


>gi|187936961 transmembrane protein 129 isoform a [Homo sapiens]
          Length = 362

 Score =  462 bits (1190), Expect = e-131
 Identities = 227/227 (100%), Positives = 227/227 (100%)

Query: 1   MDSPEVTFTLAYLVFAVCFVFTPNEFHAAGLTVQNLLSGWLGSEDAAFVPFHLRRTAATL 60
           MDSPEVTFTLAYLVFAVCFVFTPNEFHAAGLTVQNLLSGWLGSEDAAFVPFHLRRTAATL
Sbjct: 1   MDSPEVTFTLAYLVFAVCFVFTPNEFHAAGLTVQNLLSGWLGSEDAAFVPFHLRRTAATL 60

Query: 61  LCHSLLPLGYYVGMCLAASEKRLHALSQAPEAWRLFLLLAVTLPSIACILIYYWSRDRWA 120
           LCHSLLPLGYYVGMCLAASEKRLHALSQAPEAWRLFLLLAVTLPSIACILIYYWSRDRWA
Sbjct: 61  LCHSLLPLGYYVGMCLAASEKRLHALSQAPEAWRLFLLLAVTLPSIACILIYYWSRDRWA 120

Query: 121 CHPLARTLALYALPQSGWQAVASSVNTEFRRIDKFATGAPGARVIVTDTWVMKVTTYRVH 180
           CHPLARTLALYALPQSGWQAVASSVNTEFRRIDKFATGAPGARVIVTDTWVMKVTTYRVH
Sbjct: 121 CHPLARTLALYALPQSGWQAVASSVNTEFRRIDKFATGAPGARVIVTDTWVMKVTTYRVH 180

Query: 181 VAQQQDVHLTVTESRQHELSPDSNLPVQLLTIRVASTNPAVQAFDIW 227
           VAQQQDVHLTVTESRQHELSPDSNLPVQLLTIRVASTNPAVQAFDIW
Sbjct: 181 VAQQQDVHLTVTESRQHELSPDSNLPVQLLTIRVASTNPAVQAFDIW 227


>gi|4758010 clock [Homo sapiens]
          Length = 846

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 30/120 (25%)

Query: 132 ALPQSGWQAVASSVNTEFRRIDKFATG---------APGA--RVIVTDTWVMK--VTTYR 178
           ++PQ+  Q+ A +  T+ R+I +F+ G         AP A   V+V  T +M   VT Y 
Sbjct: 681 SMPQNSTQSAAVTTFTQDRQI-RFSQGQQLVTKLVTAPVACGAVMVPSTMLMGQVVTAYP 739

Query: 179 VHVAQQQDVH-LTVTESRQHELSPDSNL--------------PVQLL-TIRVASTNPAVQ 222
               QQQ    L+VT+ +Q + S +  L              P Q L T R+   NP+ Q
Sbjct: 740 TFATQQQQSQTLSVTQQQQQQSSQEQQLTSVQQPSQAQLTQPPQQFLQTSRLLHGNPSTQ 799


>gi|105990535 coagulation factor V precursor [Homo sapiens]
          Length = 2224

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 36/158 (22%), Positives = 62/158 (39%), Gaps = 33/158 (20%)

Query: 72   VGMCLAASEKRLHALSQAPEAWRLFLLLAVTLPSIACILIYYWSRDRWACHPLARTLALY 131
            +G  L   +  LH  S  P   R F+LL +T         YY  + R             
Sbjct: 1745 IGPLLICQKGILHKDSNMPMDMREFVLLFMTFDEKKSW--YYEKKSR------------- 1789

Query: 132  ALPQSGWQAVASSVNT--EFRRIDKFATGAPGARVIVTDTWVMKVTTYRVHVAQQQDVHL 189
                S W+  +S +    EF  I+      PG ++   + WV     + +++   QD+H+
Sbjct: 1790 ----SSWRLTSSEMKKSHEFHAINGMIYSLPGLKMYEQE-WVR---LHLLNIGGSQDIHV 1841

Query: 190  ------TVTES--RQHELSPDSNLPVQLLTIRVASTNP 219
                  T+ E+  +QH+L     LP    T+ + ++ P
Sbjct: 1842 VHFHGQTLLENGNKQHQLGVWPLLPGSFKTLEMKASKP 1879


>gi|90669191 solute carrier family 22 member 7 isoform b [Homo
          sapiens]
          Length = 548

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 18/43 (41%), Positives = 21/43 (48%)

Query: 48 FVPFHLRRTAATLLCHSLLPLGYYVGMCLAASEKRLHALSQAP 90
          F PF LR  A   L   LLPL + + + LAA      AL  AP
Sbjct: 13 FGPFQLRNVALLALPRVLLPLHFLLPIFLAAVPAHRCALPGAP 55


>gi|24497497 solute carrier family 22 member 7 isoform a [Homo
          sapiens]
          Length = 546

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 18/43 (41%), Positives = 21/43 (48%)

Query: 48 FVPFHLRRTAATLLCHSLLPLGYYVGMCLAASEKRLHALSQAP 90
          F PF LR  A   L   LLPL + + + LAA      AL  AP
Sbjct: 13 FGPFQLRNVALLALPRVLLPLHFLLPIFLAAVPAHRCALPGAP 55


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.134    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,748,657
Number of Sequences: 37866
Number of extensions: 346217
Number of successful extensions: 861
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 855
Number of HSP's gapped (non-prelim): 9
length of query: 232
length of database: 18,247,518
effective HSP length: 99
effective length of query: 133
effective length of database: 14,498,784
effective search space: 1928338272
effective search space used: 1928338272
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.