Search of human proteins with 188497687

Search of human proteins with 188497687

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|188497687 serum amyloid A2 isoform b [Homo sapiens]
         (83 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|188497687 serum amyloid A2 isoform b [Homo sapiens]                170   2e-43
gi|188497671 serum amyloid A2 isoform a [Homo sapiens]                160   3e-40
gi|40316912 serum amyloid A1 preproprotein [Homo sapiens]             158   8e-40
gi|40316910 serum amyloid A1 preproprotein [Homo sapiens]             158   8e-40
gi|10835095 serum amyloid A4, constitutive [Homo sapiens]              96   5e-21

>gi|188497687 serum amyloid A2 isoform b [Homo sapiens]
          Length = 83

 Score =  170 bits (431), Expect = 2e-43
 Identities = 83/83 (100%), Positives = 83/83 (100%)

Query: 1  MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60
          MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY
Sbjct: 1  MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60

Query: 61 DAAKRGPGGAWAAEVISLFSAEL 83
          DAAKRGPGGAWAAEVISLFSAEL
Sbjct: 61 DAAKRGPGGAWAAEVISLFSAEL 83


>gi|188497671 serum amyloid A2 isoform a [Homo sapiens]
          Length = 122

 Score =  160 bits (404), Expect = 3e-40
 Identities = 77/77 (100%), Positives = 77/77 (100%)

Query: 1  MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60
          MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY
Sbjct: 1  MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60

Query: 61 DAAKRGPGGAWAAEVIS 77
          DAAKRGPGGAWAAEVIS
Sbjct: 61 DAAKRGPGGAWAAEVIS 77


>gi|40316912 serum amyloid A1 preproprotein [Homo sapiens]
          Length = 122

 Score =  158 bits (400), Expect = 8e-40
 Identities = 76/77 (98%), Positives = 76/77 (98%)

Query: 1  MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60
          MKLLTGLVFCSLVL VSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY
Sbjct: 1  MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60

Query: 61 DAAKRGPGGAWAAEVIS 77
          DAAKRGPGGAWAAEVIS
Sbjct: 61 DAAKRGPGGAWAAEVIS 77


>gi|40316910 serum amyloid A1 preproprotein [Homo sapiens]
          Length = 122

 Score =  158 bits (400), Expect = 8e-40
 Identities = 76/77 (98%), Positives = 76/77 (98%)

Query: 1  MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60
          MKLLTGLVFCSLVL VSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY
Sbjct: 1  MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60

Query: 61 DAAKRGPGGAWAAEVIS 77
          DAAKRGPGGAWAAEVIS
Sbjct: 61 DAAKRGPGGAWAAEVIS 77


>gi|10835095 serum amyloid A4, constitutive [Homo sapiens]
          Length = 130

 Score = 96.3 bits (238), Expect = 5e-21
 Identities = 45/77 (58%), Positives = 59/77 (76%)

Query: 1  MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60
          M+L TG+VFCSLV+ V+S S+ SF  EA  G  DM RAY D+  +N+  S++Y +ARGNY
Sbjct: 1  MRLFTGIVFCSLVMGVTSESWRSFFKEALQGVGDMGRAYWDIMISNHQNSNRYLYARGNY 60

Query: 61 DAAKRGPGGAWAAEVIS 77
          DAA+RGPGG WAA++IS
Sbjct: 61 DAAQRGPGGVWAAKLIS 77


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,924,598
Number of Sequences: 37866
Number of extensions: 94871
Number of successful extensions: 229
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 224
Number of HSP's gapped (non-prelim): 5
length of query: 83
length of database: 18,247,518
effective HSP length: 55
effective length of query: 28
effective length of database: 16,164,888
effective search space: 452616864
effective search space used: 452616864
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.